POLYPEPTIDES HAVING EPOXY GROUP-REMOVING CATALYTIC ACTIVITY, NUCLEIC ACIDS ENCODING THE POLYPEPTIDES AND USE THEREOF
20230151371 · 2023-05-18
Inventors
Cpc classification
C12N9/00
CHEMISTRY; METALLURGY
A23L5/20
HUMAN NECESSITIES
C12N15/74
CHEMISTRY; METALLURGY
A61K38/16
HUMAN NECESSITIES
C12Q1/25
CHEMISTRY; METALLURGY
C12P21/02
CHEMISTRY; METALLURGY
International classification
A23L5/20
HUMAN NECESSITIES
A61K38/16
HUMAN NECESSITIES
C12N15/74
CHEMISTRY; METALLURGY
C12Q1/25
CHEMISTRY; METALLURGY
Abstract
A polypeptide having epoxy group-removing catalytic activity with an amino acid sequence as set forth in SEQ ID NOs: 1-35, a nucleic acid molecule encoding the polypeptide, a nucleic acid construct comprising the nucleic acid, a pharmaceutical composition for detoxification and a food, beverage or feed composition comprising the polypeptide, and a host cell and an engineered microorganism into which the nucleic acid is introduced. Disclosed are a method for producing the polypeptide; and a method for catalyzing a reaction of removing an epoxy group of a trichothecene, a method for preventing cell poisoning or relieving cytotoxicity, a method for processing a food and beverage or feed composition, and a method for reducing or decreasing a toxin in a composition, all using the polypeptide. Further disclosed are a glutathionylated derivative, a method for evaluating the detoxification effect for a sample contaminated with a trichothecene using the glutathionylated derivative.
Claims
1-39. (canceled)
40. An isolated polypeptide having epoxy group-removing catalytic activity, wherein the polypeptide is capable of catalyzing a reaction between an epoxy group of a trichothecene mycotoxin and glutathione in a PBS buffer at a temperature of 15° C. to 35° C. to produce a glutathionylated derivative.
41. An isolated polypeptide having epoxy group-removing catalytic activity, comprising an amino acid sequence selected from the group consisting of the following (1) to (5): (1) an amino acid sequences as set forth in any of SEQ ID Nos: 1-35; (2) an amino acid sequence which has 85% or more sequence identity with the amino acid sequence of (1) and is derived from the same genus; (3) an amino acid sequence which has one or more amino acid mutations and has 85% or more sequence identity as compared with the amino acid sequence of (1) or (2), and still maintains the original epoxy group-removing catalytic activity; (4) a partial consecutive sequence, preferably an N-terminal partial consecutive sequence, derived from the amino acid sequence of any of (1) to (3), and still having the original polypeptide activity; and (5) a chimeric sequence in which an additional amino acid sequence is linked to the N-terminal and/or C-terminal of the amino acid sequence of any of (1) to (4).
42. The polypeptide according to claim 40, wherein the polypeptide is derived from Thinopyrum or Epichloë.
43. The polypeptide according to claim 41, wherein the polypeptide has conserved sites of amino acid A at position 98 and amino acid A at position 99, when the amino acid sequence as set forth in SEQ ID NO: 1 is used as a positional reference.
44. An isolated active polypeptide having an amino acid sequence of: TABLE-US-00013 V1-GDX1X2DIAAX3LQRT-V2-ADYARFNX1NVDX4AFX5AHV X1X6MX6HGLPLDPAX7X4DVX8KAEFVR-V3, wherein: X1 represents G or S; X2 represents F or L; X3 represents Y or H; X4 represents A or V; X5 represents T or Q or N; X6 represents L or V; X7 represents T or S; and X8 represents T or I; V1 is absent or represents a first variable region, the amino acid sequence of the first variable region corresponds to a sequence of a plurality of consecutive amino acids before the amino acid at position 92 in SEQ ID NO: 1, and the sequence identity of the first variable region with the sequence of the plurality of consecutive amino acids is 85% or more; V2 represents a linker arm or represents a second variable region, the amino acid sequence of the second variable region corresponds to a sequence of a plurality of consecutive amino acids between the amino acids at positions 105 to 143 in SEQ ID NO: 1, and the sequence identity of the second variable region with the sequence of the plurality of consecutive amino acids is 85% or more; and V3 is absent or represents a third variable region, the amino acid sequence of the third variable region corresponds to a sequence of a plurality of consecutive amino acids after the amino acid at position 144 in SEQ ID NO: 1, and the sequence identity of the third variable region with the sequence of the plurality of consecutive amino acids is 85% or more.
45. An isolated nucleic acid molecule encoding the polypeptide according to claim 40.
46. An isolated nucleic acid molecule having a base sequence selected from the group consisting of the following (a) to (e): (a) a sequence as set forth in any of SEQ ID Nos: 36-70; (b) a sequence modified for the host codon bias based on the base sequence of (a); (c) a conserved region sequence of the sequences as set forth in (a); (d) a sequence which has 85% or more sequence identity with any of (a) to (c), is derived from the same genus, and encodes a polypeptide having epoxy group-removing catalytic activity; and (e) a sequence complementary to at least a portion of any of the sequences of (a) to (d).
47. A nucleic acid construct, comprising the nucleic acid according to claim 45 and optionally a regulatory element.
48. A pharmaceutical composition for detoxification, comprising a polypeptide having epoxy group-removing activity or a nucleic acid encoding therefor and optionally a pharmaceutically acceptable carrier, wherein the active polypeptide is capable of catalyzing a reaction between a trichothecene mycotoxin and glutathione to produce a glutathionylated derivative, thereby removing epoxy groups that cause toxin toxicity.
49. The pharmaceutical composition for detoxification according to claim 48, wherein the active polypeptide is the polypeptide, and the nucleic acid is the nucleic acid molecule.
50. The pharmaceutical composition for detoxification according to claim 48, further comprising glutathione.
51. A food and beverage or feed composition, comprising de-epoxidase which is capable of catalyzing a reaction between a trichothecene mycotoxin and glutathione in a PBS buffer at a temperature of 15° C. to 35° C. to produce a glutathionylated derivative.
52. The food and beverage or feed composition according to claim 51, wherein the enzyme is the polypeptide.
53. The food and beverage or feed composition according to claim 51, wherein the food and beverage composition further comprises glutathione.
54. The food and beverage or feed composition according to claim 51, wherein the food and beverage or feed composition comprises at least one grain flour selected from the group consisting of wheat flour, barley flour, rye flour, oat flour, corn flour, millet flour, rice flour, sorghum flour, soybean flour, potato flour, sweet potato flour, and peanut flour; or comprises a processed food product such as soybean hull, soybean milk, germ meal, germ, vegetable oil, starch, glucose, protein powder, alcohol and fermented product.
55. The food and beverage or feed composition according to claim 51, comprising at least one fruit juice or beverage ingredient selected from the group consisting of milk, dairy products, apples, citruses and grapes.
56. An engineered microorganism, comprising a nucleic acid derived from Thinopyrum and/or Epichloë that is introduced exogenously or by gene recombination, the nucleic acid being the nucleic acid according to claim 45.
57. The engineered microorganism according to claim 56, comprising the polypeptide.
58. A method for catalyzing a reaction of removing an epoxy group of a trichothecene, wherein the method comprises contacting the polypeptide according to claim 40 with a trichothecene and glutathione, thereby producing a glutathionylated derivative; preferably, the trichothecene comprises deoxynivalenol, 15-acetyl-deoxynivalenol, 3-acetyl-deoxynivalenol, nivalenol, fusarenon-X, diacetoxyscirpenol, T-2 toxin and HT-2 toxin.
59. A method for preventing cell poisoning or relieving cytotoxicity, wherein the method comprises contacting a cell to be treated with a polypeptide having epoxy group-removing activity or a nucleic acid encoding therefor, or a cell producing the active polypeptide, and optionally glutathione.
60. A method for reducing or decreasing a toxin in a composition, wherein the method comprises contacting a food and beverage or feed raw material comprising a toxin with de-epoxidase or a cell producing the enzyme under conditions suitable for the reaction, wherein the toxin is a trichothecene.
61. A glutathionylated derivative, having a structure shown in the following general formula (I): ##STR00004## wherein each of R.sub.1, R.sub.2 and R.sub.3 independently represents a hydrogen atom, a hydroxyl group or an ester group represented by —OCO—R′, wherein R′ is a linear or branched C.sub.1-C.sub.8 alkyl group, R.sub.4 represents a hydrogen atom or a hydroxyl group, and R.sub.5 represents a hydrogen atom, ═O, a hydroxyl group or an ester group represented by —OCO—R″, wherein R″ is a linear or branched C.sub.1-C.sub.10 alkyl group.
62. A method for plant breeding, disease control comprising: introducing the nucleic acid according to claim 45 into a host; allowing the nucleic acid to be expressed, thereby obtaining a polypeptide having epoxy group-removing activity; degrading toxins by using the polypeptide to generate glutathionylated derivative.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION OF EMBODIMENTS
[0081] Various exemplary implementations of the present invention are now described in detail. The detailed description should not be considered as a limitation on the present invention, but should be understood as a more detailed description of certain aspects, characteristics, and embodiments of the present invention. “%” is a percentage based on weight, unless otherwise specified.
[0082] Herein, the terms “polypeptide” and “protein” are used interchangeably and refer to a polymer of amino acid residues as well as variants and synthetic and naturally occurring analogs thereof. Both terms apply to an amino acid polymer in which one or more amino acid residues are synthetic, non-naturally occurring amino acids (such as chemical analogs of the corresponding naturally occurring amino acids), as well as to a naturally occurring amino acid polymer and a naturally occurring chemical derivative thereof. Such chemical derivatives comprise, for example, post-translational modification and degradation products, comprising pyroglutamylated, isoaspartylated, proteolytic, phosphorylated, glycosylated, oxidized, isomerized and deaminated variants.
[0083] Herein, the term “active polypeptide” refers to a polypeptide having catalytic activity of de-epoxidase, i.e., an active polypeptide that converts an epoxy group into another group or removes the epoxy group. It is also sometimes referred to herein as an “enzyme”.
[0084] Herein, the term “sequence identity” refers to the degree to which sequences are identical on a nucleotide-by-nucleotide basis or on an amino acid-by-amino acid basis within a comparison window. Thus, the percent sequence identity can be calculated by comparing the two optimally aligned sequences in a comparison window, determining the number of positions where the same nucleic acid base or the same amino acid residue occurs in the two sequences to obtain a number of matched positions, dividing the number of matched positions by the total number of positions in the comparison window (i.e., window size), and multiplying the result by 100 to obtain the percent sequence identity.
[0085] Herein, the calculation of sequence identity or sequence similarity (used interchangeably herein) between two sequences is performed by the following method. To determine the percent identity of two amino acid sequences or two nucleic acid sequences, the sequences are aligned for optimal comparison purposes (for example, gaps can be introduced in one or both of the first and second amino acid or nucleic acid sequences for optimal alignment, and non-homologous sequences can not be taken into consideration for comparison purposes). In certain embodiments, the length of the reference sequence aligned for comparison purposes is at least 30%, preferably at least 40%, more preferably at least 50%, still preferably at least 70%, 80% and 90%, even 100% of the entire length of the reference sequence. The amino acid residues or nucleotides at corresponding amino acid positions or nucleotide positions are then compared. When a position in the first sequence is occupied by the same amino acid residue or nucleotide as the corresponding position in the second sequence, the molecules are identical at that position. The percent identity between two sequences is a function of the number of identical positions shared by the sequences, where the number of gaps and the length of each of gaps which needs to be introduced for optimal alignment of the two sequences are taken into account. Sequence comparison and determination of percent identity between two sequences can be accomplished using mathematical algorithms. The percent identity between two amino acid sequences or between two nucleotide sequences can be determined using the GAP program in the GCG software package (available at http://www.gcg.com) or the ALIGN program (Version 2.0).
[0086] Herein, for the term “amino acid at position x” or similar expressions, the amino acid sequence of the de-epoxidase derived from Thinopyrum ponticum is taken as a position reference, that is, the amino acid sequence as set forth in SEQ ID NO: 1 is used as a position reference, unless explicitly specified otherwise. Similarly, for the term “base at position y” or similar expressions, the base sequence of the de-epoxidase gene derived from Thinopyrum ponticum is taken as a position reference, that is, the base sequence as set forth in SEQ ID NO: 36 is used as a position reference, unless explicitly specified otherwise.
[0087] Herein, the term “trichothecene mycotoxin” or “trichothecene” refers to a generic term for a class of compounds which have a basic chemical structure of sesquiterpene, and in which an epoxy group is formed between the 12-position carbon and the 13-position carbon. Preferably, the trichothecene mycotoxin has a structure shown in the following general formula (II):
##STR00002##
[0088] wherein each of R.sub.1, R.sub.2 and R.sub.3 independently represents a hydrogen atom, a hydroxyl group or an ester group represented by —OCO—R′, wherein R′ is a linear or branched C.sub.1-C.sub.5 alkyl group, e.g., CH.sub.3, CH.sub.2CH.sub.3, CH.sub.2CH.sub.2CH.sub.3 or CH.sub.2(CH.sub.3).sub.2, R.sub.4 represents a hydrogen atom or a hydroxyl group, and R.sub.5 represents a hydrogen atom, ═O, a hydroxyl group or an ester group represented by —OCO—R″, wherein R″ is a linear or branched C.sub.1-C.sub.10 alkyl group, preferably CH.sub.3 and CH.sub.2CH.sub.3, still preferably a linear or branched C.sub.3-C.sub.8 alkyl group, more preferably CH.sub.2CH(CH.sub.3).sub.2. In certain embodiments, trichothecene mycotoxins comprises deoxynivalenol (DON), 15-acetyl-deoxynivalenol (15-ADON), 3-acetyl-deoxynivalenol (3-ADON), nivalenol (NIV), fusarenon-X (Fus-X), diacetoxyscirpenol (DAS), T-2 toxin (T-2), and HT-2 toxin (HT-2).
[0089] Herein, the term “epoxy group-removing catalytic activity” refers to an activity or function of removing an epoxy group (preferably the epoxy group formed between the 12-position carbon and the 13-position carbon) in a trichothecene mycotoxin. The specific catalytic process is as follows:
##STR00003##
[0090] wherein R.sub.1 to R.sub.5 have the same meanings as in the general formulae (I) and (II).
EXAMPLES
[0091] I. Preparation of FTCD Active Polypeptide
[0092] 1. Materials and Methods
[0093] Escherichia coli DH5a strain, expression strain BL21 (DE3), prokaryotic expression vector pET-28a(+) and plasmid pMD19-T-FTCD were preserved in our laboratory, wherein plasmid pMD19-T-FTCD contained a de-epoxidase gene derived from Thinopyrum, the sequence of which was shown in SEQ ID NO: 36.
[0094] 1.2 Experimental Methods
[0095] 1.2.1 The Recombinant Expression Vector pET28a-FTCD was Constructed by the Following Method.
[0096] The primers with NcoI and BamHI restriction sites were designed according to the sequence of expression vector pET28a, and the primer sequences were as follows (underlined sequences indicate the restriction sites):
TABLE-US-00002 Forward primer: 5′-CCATGGCTAGAAATCCACCCATCGTCATCACC-3′ Reverse primer: 5′-GGATCCTCTTCACCTCGGCATACTTGTC-3′
[0097] PCR amplification was performed using plasmid pMD19-T-FTCD as a template. The amplification product was detected by 1% agarose gel electrophoresis, and a target fragment was recovered by cutting the gel; the target fragment and pET28a vector were digested by double enzymes, NcoI and BamHI, respectively, followed by gel recovery and ligation with T4 ligase; the ligation product was transformed into Escherichia coli DH5a, and colony PCR and double digestion identification were performed to obtain a target gene of about 900 bp and pET28a vector backbone of about 5,000 bp. Further sequencing was performed to verify that the sequence and the reading frame of the recombinant expression vector pET28a-FTCD were correct.
[0098] 1.2.2 Induced Expression of Polypeptides
[0099] The recombinant expression vector plasmid pET28a-FTCD was transformed into the competent cells of Escherichia coli expression strain BL21(DE3); after PCR detection, the positive monoclones on transformation plates were picked and inoculated into test tubes containing 50 μg/mL Kana in 3 mL of LB liquid medium, and shaken at 37° C. at 220 r/min overnight. The next day, the culture was inoculated into a Kana LB liquid medium and shaken until the OD600 of the bacterial cells was 0.6 to 0.8. 1 mL of the culture was taken out and centrifuged at room temperature for 2 min, the supernatant was discarded, and the bacterial pellet was resuspended in 100 μl of 1× loading buffer. IPTG was added to the remaining culture to a final concentration of 0.5 mM, and the fusion protein was induced to express by shaking at 37° C. at 220 r/min for 4 h. 1 mL of the culture was taken out and centrifuged at 10,000 r/min for 2 min at room temperature, the supernatant was discarded, and the bacterial pellet was resuspended in 100 μl of 1× loading buffer. The remaining culture was centrifuged at 4,000 r/min for 10 min, the supernatant was discarded, and the bacterial pellet was resuspended in PBS; after the resuspension solution was treated by ultrasonication, the supernatant and the pellet were taken and added to the loading buffer to resuspend respectively.
[0100] 1.2.3 Purification of Polypeptides
[0101] The protein solution was purified using Ni column and collected using a low pressure chromatography system, and added to a dialysis bag for overnight dialysis against 50 mM Tris-HCl, 0.30 M NaCl, pH 8.0.
[0102] The dialyzed product was shaken at 37° C. for 4 h to induce protein expression with 0.5 mmol/L IPTG, and the bacterial cells were collected and resuspended in PBS. After ultrasonication, the supernatant was collected, and the supernatant was purified by a Ni column and a molecular sieve. The results of SDS-PAGE electrophoresis showed that a polypeptide in the form of soluble protein was obtained, with a molecular weight of about 33 kDa, and the purified protein had a single band, indicating that the purification effect was good (see
[0103] II. Establishment of an In Vitro Enzymatic Reaction System of Polypeptide
[0104] 1. Experimental Methods:
[0105] 1.1 Reagent: 0.5 mg/ml Trichothecenes (DON, 3DON, 15ADON, FUS-X, NIV, T2, H-T2, and DAS) Prepared by Adding Distilled Water to 1 mg of Trichothecenes to 2 ml, Filtered and Sterilized.
[0106] 1.2 Establishment of an In Vitro Enzymatic Reaction System
[0107] The optimal conditions for the in vitro enzymatic reaction system of FTCD polypeptide were established by gradient experiments of three different factors affecting the enzymatic reaction:
[0108] (1) the gradient of reaction enzyme amounts: 1 μg, 5 μg, 10 μg, 25 μg, and 50 μg;
[0109] (2) the pH gradient set with various buffers: ranging from 3.0 to 10.0, disodium hydrogen phosphate-citric acid buffer (pH=3.0, 4.0, 5.0), disodium hydrogen phosphate-potassium dihydrogen phosphate buffer (pH=6.0, 7.0), and Tris-phosphate buffer (pH=8.0, 9.0, 10.0); and
[0110] (3) the gradient of reaction temperatures: 4° C., 12° C., 15° C., 20° C., 25° C., 30° C., 37° C., 45° C., and 50° C.
[0111] 2. Experimental Results:
[0112] 2.1 Effect of Enzyme Amount on the Enzymatic Reaction System
[0113] The reaction was performed in a phosphate buffer (PBS) (pH=7.0), at 25° C. for 12 h, and samples were taken at 0 h, 0.5 h, 1 h, 3 h, and 6 h respectively for LC-HRMS analysis; through the area results of first-level scanning of LC-HRMS, the changes in the contents of the two substances, DON as the reaction substrate and the GSH adduct as the reaction product, were obtained with proceeding of reaction, so as to obtain the optimal enzyme amount for the reaction, as shown in
[0114] The experimental results obtained by changing the enzyme amount showed that when the enzyme amount was 1 to 25 μg, the amount of DON-GSH produced was positively correlated with the amount of enzyme added within the same time period. When the enzyme amount exceeded 25 μg, the amount of DON-GSH produced tended to be stable. Therefore, 25 μg was chosen as the optimal test enzyme amount.
[0115] 2.2 Effect of pH of the Reaction System on the Enzymatic Reaction System
[0116] The experimental results of the pH gradient of the enzymatic reaction buffer were shown in
[0117] 3. Effect of Reaction Temperature on the Enzymatic Reaction System
[0118] According to the above experimental results, under the conditions at the pH of the reaction buffer of 7.0 and the addition amount of enzyme of 25 μg, the temperatures were set at 4° C., 12° C., 15° C., 20° C., 25° C., 30° C., 37° C., 45° C., and 50° C., and the reaction time was 24 h; samples were taken at 0 h, 0.5 h, 1 h, 6 h, 12 h, and 24 h respectively for LC-HRMS analysis; through the area results of first-level scanning of LC-HRMS, the changes in the contents of the two substances, DON as the reaction substrate and the GSH adduct as the reaction product, were obtained with proceeding of reaction, so as to obtain the optimal temperature for the reaction.
[0119] The results of experiments obtained by setting different reaction temperatures were shown in FIGS. A and 4B.
[0120] The above experimental results showed that the most suitable conditions to carry out in vitro enzymatic reaction were as follows: in the reaction system, 25 μg of purified FTCD protein was added, and after adding an appropriate amount of reaction substrates, the system was supplemented to 200 μl with a buffer at a pH of 5.0 to 7.0, mixed, and reacted at 20° C. to 25° C.
III. The Reaction of Removing Epoxy Groups of Trichothecene Mycotoxins Catalyzed by Active Polypeptide FTCD
[0121] 1. Experimental Methods:
[0122] 1.1 In Vitro Enzymatic Reaction:
[0123] DON, 3-DON, 15-ADON, NIV, DAS, HT-2, and T-2 toxins (1 mg) were dissolved in freshly prepared GSH (30.7 mg, 100 μmol in PBS buffer respectively, and the enzyme was added, and incubated in a water bath at 20° C. for 24 h.
[0124] 1.2 LC-HRMS (/MS) analysis
[0125] The in vitro reaction solution was filtered through a 0.22 μm filter membrane, and transferred to an injection vial for LC-HRMS detection.
[0126] Thermo Scientific™ Q Exactive™ Hybrid Quadrupole Orbitrap Mass Spectrometer was used. A UHPLC system (Accela, Thermo Fisher Scientific, San Jose, Calif., USA) was used in conjunction with an Orbitrap equipped with an electrospray ionization (ESI) source. Chromatography was performed on a reverse phase XBridge C18, with an inner diameter of 150><2.1 mm, and a particle size of 3.5 μm (Waters, Dublin, Ireland), at a column temperature of 35° C. The flow rate was 300 μL min.sup.−1, and the injection volume was 3 μL. U3000 liquid chromatograph was used with the following conditions: mobile phase: A: 0.1% aqueous acetic acid, B: acetonitrile; elution gradient: A=90% at 0 to 0.2 min; A gradually decreased to 10% at 0.2 to 6 min; A=10% at 6 to 8 min; A gradually increased to 90% at 8.1 min; and A=90% at 8.1 to 10 min.
[0127] (1) Full scan mode: This mode rapidly performed alternated positive and negative ion scans in the m/z range of 200 to 1000. The ESI interface in positive ion mode was set as follows: sheath gas: 40; auxiliary gas: 10; capillary voltage: 3.8 kV; and capillary temperature: 350° C. The AGC target was set to 2><e5. The ESI interface in negative ion mode was set to 2.9 kV; sheath gas: 4; and auxiliary gas: 0. The resolution in this mode was set to 70,000.
[0128] (2) The liquid chromatography method and chromatographic conditions in Full scan+ddms (first-level full scan+automatic triggering of second-level) mode were the same as above. In this method, full scan and MS2 scan were used alternately with normalized collision energy set to 20 eV and resolution set to 17,500 during product ion scanning
[0129] (3) PRM mode can be used to quantify the relative abundance of toxins and their derivatives in a sample. After screening of precursor ions in PRM mode, dissociation was induced at normalized collision energy (HCID), followed by fragment detection of product ions in Orbitrap with a resolution set to 17,500. Normalized collision energies were used, with collision energies applied (15, 30 and 45 eV) being dependent on the specific analyte.
[0130] Xcalibur 2.1.0 (Thermo Fisher Scientific, San Jose, Calif., USA) were used for analysis of data of LC-HRMS (/MS). Extracted ion chromatograms (EICs) of toxins and their derivatives were investigated using the extracted chromatographic peak shape, retention time (±0.2 min) and mass (±5 ppm) of the bioconversion products. According to secondary spectra and basic structures of the substances, the neutral loss was analyzed, and chemical structures were inferred.
[0131] 2. Experimental Results
[0132] 2.1 Catalyzing and Converting DON Toxin to Glutathione Adduct DON-GSH by FTCD
[0133]
[0134]
[0135] After the loss of glycine in DON-GSH, a fragment ion with an m/z of 529.18503 (C.sub.23H.sub.33O.sub.10N.sub.2S.sup.+) can be obtained, and a fragment ion with an m/z of 475.17466 (C.sub.20H.sub.31O.sub.9N.sub.2S.sup.+) can also be obtained after the loss of anhydroglutamic acid. The ion fragment with the side chain at C-6 lost, with an m/z of 574.20717 (C.sub.24H.sub.36O.sub.11N.sub.3S.sup.+), can generate a characteristic ion (C.sub.19H.sub.29O.sub.8N.sub.2S.sup.+) with an m/z of 445.16389 after the loss of anhydroglutamic acid from the GSH moiety; and can also generate an ion with an m/z of 428.13733 (C.sub.19H.sub.26O.sub.8NS.sup.+) after removing of glutamine.
[0136] The product ion had an m/z of 308.09108 (C.sub.10H.sub.18O.sub.6N.sub.3S.sup.+, corresponding to [M+H].sup.+ of GSH). This fragment ion lost anhydroglutamic acid to obtain an ion with an m/z of 179.04907 (C.sub.5H.sub.11O.sub.3N.sub.2S.sup.+); and lost glutamine to obtain an ion with an m/z of 162.02251 (C.sub.5H.sub.9O.sub.3NS.sup.+). In addition, the product ions with m/z ratios of 130.05044 (C.sub.5H.sub.8O.sub.3N.sup.+) and 145.06077 (C.sub.5H.sub.9O.sub.3N.sub.2.sup.+) were associated with GSH.
[0137] 2.2 Catalyzing and Converting 3-ADON Toxin to Glutathione Adduct 3-ADON-GSH by FTCD
[0138]
[0139]
[0140] After the loss of glycine in 3-ADON-GSH, a fragment ion with an m/z of 571.19560 (C.sub.25H.sub.35O.sub.11N.sub.2S.sup.+) can be obtained, and by further fragmentation of the side chain at C-6, a fragment ion with an m/z of 541.18503 (C.sub.24H.sub.33O.sub.10N.sub.2S.sup.+) can be yielded. A fragment ion m/z 628.21707 (C.sub.27H.sub.38O.sub.12N.sub.3S.sup.+) obtained by removing of 1 molecule of H.sub.2O can generate an ion with an m/z of 553.18503 (C.sub.25H.sub.33O.sub.10N.sub.2S.sup.+) after the loss of glycine, and also generate an ion with an m/z of 499.17466 (C.sub.22H.sub.31O.sub.9N.sub.2S.sup.+) after the loss of anhydroglutamic acid.
[0141] 2.3 Catalyzing and Converting 15-ADON Toxin to Glutathione Adduct 15-ADON-GSH by FTCD
[0142]
[0143]
[0144] Like the case of 3-ADON-GSH, after the loss of glycine in 15-ADON-GSH, a product ion with an m/z of 571.1956 (C.sub.25H.sub.35O.sub.11N.sub.2S.sup.+) can be obtained. An ion with an m/z of 628.21707 (C.sub.27H.sub.38O.sub.12N.sub.3S.sup.+) obtained by removing of 1 molecule of H.sub.2O can generate an ion with an m/z of 553.18503 (C.sub.25H.sub.33O.sub.10N.sub.2S.sup.+) after the loss of glycine. An ion with an m/z of 499.17466 (C.sub.22H.sub.31O.sub.9N.sub.2S.sup.+) can be obtained after the loss of anhydroglutamic acid.
[0145] The characteristic ion with an m/z of 440.13736 (C.sub.20H.sub.26O.sub.8NS.sup.+) can generate a fragment ion with an m/z of 311.09475 (C.sub.15H.sub.19O.sub.5S.sup.+) after the loss of anhydroglutamic acid. The characteristic ion with an m/z of 450.15471 (C.sub.17H.sub.28O.sub.9N.sub.3S.sup.+) generated a product ion with an m/z of 375.12267 (C.sub.15H.sub.23O.sub.7N.sub.2S.sup.+) after the loss of glycine; also generated an ion with an m/z of 321.1121 (C.sub.12H.sub.21O.sub.6N.sub.2S.sup.+) after the loss of anhydroglutamic acid; and in addition, the characteristic ion can further generate a product ion with an m/z of 414.13295 (C.sub.17H.sub.24O.sub.7N.sub.3S.sup.+) after removing two molecules of H.sub.2O, and this product ion can further generate an ion with an m/z of 339.10091 (C.sub.15H.sub.19O.sub.5N.sub.2S.sup.+) after the loss of glycine, and also generate an ion with an m/z of 285.09035 (C.sub.12H.sub.17O.sub.4N.sub.2S.sup.+) after the loss of anhydroglutamic acid that can further generate an ion with an m/z of 267.07979 (C.sub.12H.sub.15O.sub.3N.sub.2S.sup.+) after dehydration. The characteristic ion with an m/z of 145.06077 (C.sub.5H.sub.9O.sub.3N.sub.2.sup.+, Δ±5 ppm) associated with GSH was the base peak of the mass spectrogram.
[0146] 2.4 Catalyzing and Converting NIV Toxin to Glutathione Adduct NIV-GSH by FTCD
[0147] As shown in
[0148]
[0149] After the loss of glycine in NIV-GSH, a product ion with an m/z of 545.17995 (C.sub.23H.sub.33O.sub.11N.sub.2S.sup.+) can be obtained. A product ion with an m/z of 491.16938 (C.sub.20H.sub.31O.sub.10N.sub.2S.sup.+) can also be obtained after the loss of anhydroglutamic acid. An ion with an m/z of 590.20142 (C.sub.24H.sub.36O.sub.12N.sub.3S.sup.+) was obtained after the cleavage of the side chain at C-6; and after the GSH moiety of this ion lost anhydroglutamic acid, a product ion with an m/z of 461.15881 (C.sub.19H.sub.29O.sub.9N.sub.2S.sup.+) can be obtained.
[0150] The GSH in the form of [M+H].sup.+ can generate a product ion with an m/z of 162.02251 (C.sub.5H.sub.9O.sub.3NS.sup.+) after the loss of glutamine; and can also generate an ion with an m/z of 179.04907 (C.sub.5H.sub.11O.sub.3N.sub.2S.sup.+) after the loss of anhydroglutamic acid, which was the most prominent product ion in the HRMS.sub.2 mass spectrogram. In addition, both the product ion with an m/z of 130.05044 (C.sub.5H.sub.8O.sub.3N.sup.+) and the product ion with an m/z of 145.06077 (C.sub.5H.sub.9O.sub.3N.sub.2.sup.+) were associated with GSH.
[0151] 2.5 Catalyzing and Converting Fus-X Toxin to Glutathione Adduct Fus-X-GSH by FTCD
[0152]
[0153]
[0154] After the loss of glycine in FusX-GSH, a product ion with an m/z of 587.19051 (C.sub.25H.sub.35O.sub.12N.sub.2S.sup.+) can be obtained. A characteristic ion with an m/z of 632.21198 (C.sub.26H.sub.38O.sub.13N.sub.3S.sup.+) formed after cleavage of the side chain at C-6 can generate a product ion with an m/z of 503.16937 (C.sub.21H.sub.31O.sub.10N.sub.2S.sup.+) after the loss of anhydroglutamic acid, and also generate an ion with an m/z of 486.14281 (C.sub.21H.sub.28O.sub.10NS.sup.+) after the loss of glutamine. The product ion with an m/z of 503.16937 (C.sub.24H.sub.36O.sub.12N.sub.3S.sup.+) was the most prominent product ion in the HRMS.sub.2 mass spectrogram.
[0155] The GSH in the form of [M+H].sup.+ can generate a product ion with an m/z of 162.02251 (C.sub.5H.sub.9O.sub.3NS.sup.+) after the loss of glutamine; and can also generate an ion with an m/z of 179.04907 (C.sub.5H.sub.11O.sub.3N.sup.2S.sup.+) after the loss of anhydroglutamic acid. In addition, both the product ion with an m/z of 130.05044 (C.sub.5H.sub.8O.sub.3N.sup.+) and the product ion with an m/z of 145.06077 (C.sub.5H.sub.9O.sub.3N.sub.2.sup.+) were associated with GSH.
[0156] 2.6 Catalyzing and Converting DAS Toxin to Glutathione Adduct DAS-GSH by FTCD
[0157]
[0158]
[0159] DAS-GSH can generate a product ion with an m/z of 599.22690 (C.sub.27H.sub.39O.sub.11N.sub.2S.sup.+) after the loss of glycine; a product ion with an m/z of 528.18977 (C.sub.24H.sub.34O.sub.10NS.sup.+) after the loss of glutamine; a product ion with an m/z of 545.21633 (C.sub.24H.sub.37O.sub.10N.sub.2S.sup.+) after the loss of anhydroglutamic acid; and also a characteristic ion with an m/z of 614.23781 (C.sub.27H.sub.40O.sub.11N.sub.3S.sup.+) after the loss of CH3COOH.
[0160] Among the product ions with m/z ratios of 130.05044 (C.sub.5H.sub.8O.sub.3N.sup.+), 145.06077 (C.sub.5H.sub.9O.sub.3N.sub.2.sup.+), 162.02251 (C.sub.5H.sub.9O.sub.3NS.sup.+), and 179.04907 (C.sub.5H.sub.11O.sub.3N.sub.2S.sup.+) associated with GSH, the characteristic ion with an m/z of 179.04907 (C.sub.5H.sub.11O.sub.3N.sub.2S.sup.+) obtained after the loss of anhydroglutamic acid was the base peak of the mass spectrogram.
[0161] 2.7 Catalyzing and Converting HT-2 to Glutathione Adduct HT-2-GSH by FTCD
[0162]
[0163]
[0164] A characteristic ion with an m/z of 570.21226 (C.sub.25H.sub.36O.sub.10N.sub.3S.sup.+) can be obtained after the cleavage of side chains of HT-GSH at C-8 and C-15, and this ion can generate a fragment ion with an m/z of 495.18022 (C.sub.23H.sub.31O.sub.8N.sub.2S.sup.+) after the loss of glycine, a fragment ion with an m/z of 441.16965 (C.sub.20H.sub.29O.sub.7N.sub.2S.sup.+) after the loss of anhydroglutamic acid, and also a fragment ion with an m/z of 424.14309 (C.sub.20H.sub.26O.sub.7NS.sup.+) after the loss of glutamine. The base peak of the mass spectrogram was at m/z of 441.16965.
[0165] In addition, ions with m/z ratios of 130.05044 (C.sub.5H.sub.8O.sub.3N.sup.+), 145.06077 (C.sub.5H.sub.9O.sub.3N.sub.2.sup.+), 162.02251 (C.sub.5H.sub.9O.sub.3NS.sup.+), and 179.04907 (C.sub.5H.sub.11O.sub.3N.sub.2S.sup.+) associated with GSH were also detected.
[0166] 2.8 Catalyzing and Converting T-2 to Glutathione Adduct T-2-GSH by FTCD
[0167]
[0168]
[0169] The characteristic ion with an m/z of 612.22283 (C.sub.27H.sub.38O.sub.11N.sub.3S.sup.+) obtained after the cleavage of the side chains of T2-GSH at C-8 and C-15 was the base peak of the mass spectrogram. This ion can generate a fragment ion with an m/z of 537.19079 (C.sub.25H.sub.33O.sub.9N.sub.2S.sup.+) after the loss of glycine; a fragment ion with an m/z of 483.18022 (C.sub.22H.sub.31O.sub.8N.sub.2S.sup.+) after the loss of anhydroglutamic acid; and also a fragment ion with an m/z of 466.15366 (C.sub.22H.sub.28O.sub.8NS.sup.+) after the loss of glutamine.
[0170] Like the case of HT2-GSH, ions with m/z ratios of 130.05044 (C.sub.5H.sub.8O.sub.3N.sup.+), 145.06077 (C.sub.5H.sub.9O.sub.3N.sub.2.sup.+), 162.02251 (C.sub.5H.sub.9O.sub.3NS.sup.+), and 179.04907 (C.sub.5H.sub.11O.sub.3N.sub.2S.sup.+) associated with GSH were detected.
[0171] 3. Experimental Conclusion
[0172] The active polypeptide of the present invention can efficiently catalyze trichothecene mycotoxins (comprising DON, 3DON, 15ADON, FUS-X, NIV, T2, H-T2, DAS, and the like) into glutathione adducts in vitro, and it can be seen from the secondary spectrum that the formation of the adducts destroyed the epoxy ring structure playing a major role in the toxicity of trichothecenes, which can greatly reduce the toxicity of the toxins.
[0173] IV. Cytotoxicity Test of Trichothecene Mycotoxin-GSH Derivatives
[0174] 1. Cell Culture
[0175] Using a DMEM basal medium supplemented with 10% fetal bovine serum and 500 μl of penicillin-streptomycin (double antibiotics), the pancreatic cancer cell line (PATU8988), human embryonic kidney cell 293-derived line (293T) and normal human esophageal epithelial cells (HEECs) were cultured in a thermostatic incubator with 5% CO2 at 37° C. When the cells grew to 80% to 90% adherent to the wall of the flask, they were subcultured every 2 to 3 d, and the cells were collected by trypsinization and subcultured. According to the cell growth state, cells at the logarithmic growth stage were selected for experiments.
[0176] 2. Cytotoxicity Assay by CCK8 Method
[0177] The Cell Counting Kit-8 (CCK-8 for short) reagent can be used to analyze cell proliferation and cytotoxicity. The three cell lines at the logarithmic growth stage were inoculated into 96-well plates with 100 ul (about 5×10.sup.3 cells) per well, and were routinely cultured for 24 h at 37° C. with 5% CO2. The medium was discarded and grouped. Wells were set in triplicate for each group for observation, and the treatment methods of each group were as follows: the blank group was the zero-adjustment well containing medium only, the control group was the DMEM medium containing 10% fetal bovine serum, and gradients of low, medium and high concentrations were all set for trichothecenes and their corresponding glutathione adducts produced by the enzymatic reaction. After culturing at 37° C. for 48 h, 10 ul of CCK8 solution was added to each well to continue the culture. After 2 h, the culture supernatants in the wells were carefully pipetted and discarded, the OD value of each well was measured by a full-wavelength multi-functional microplate reader at a wavelength of 450 nm, and the cell viability was calculated.
[0178] 3. Experimental Results
[0179] The cells were plated at a concentration of 5×10.sup.7 L.sup.−1, and the OD450 values for the pancreatic cancer cell line (PATU8988), human embryonic kidney cell 293-derived line (293T) and normal human esophageal epithelial cells (HEEC) were detected using a CCK-8 microplate reader after 48 h treatment with trichothecenes and their corresponding glutathione adducts produced by the enzymatic reaction. Wells were set in triplicate for each group for observation, and the treatment methods of each group were as follows: the blank group was the zero-adjustment well containing medium only, the control group was the DMEM medium containing 10% fetal bovine serum, and trichothecenes and their corresponding glutathione adducts produced by the enzymatic reaction were provided at corresponding concentrations according to the results in literatures for treatment. The results were shown in
[0180] As shown in
[0181] Through the above experiments, it was found that all the trichothecenes can have a strong inhibitory effect on the cell viability, while the corresponding glutathione adducts of most trichothecenes had almost no effect on cell viability at the same mass concentrations. In conclusion, the production of glutathione adducts of trichothecenes can greatly reduce the toxic effects of these trichothecenes on cells.
[0182] V. Research on Host Cells Expressing the FTCD Active Polypeptide and its Function
[0183] 1. Construction of yeast expression plasmid pPICZαA-FTCD
[0184] The cDNA of the de-epoxidase gene derived from Thinopyrum ponticum had a length of 865 bp (SEQ ID NO: 36), the sequence did not comprise Bsp119I and XbaI restriction sites, and the primer sequences were designed as follows:
TABLE-US-00003 F: 5′-ATTATTCGAAAGAAATCCACCCATCGTCATCACC-3′ R: 5′-TTGTTCTAGACTACTTCACCTCGGCATACTTGTC-3′
[0185] The underlined portions are restriction endonuclease sites. The whole gene sequence of the cDNA was obtained by PCR. The PCR product was purified, and digested by double enzymes, Bsp119I and XbaI, and meanwhile the expression vector pPICZαA was digested with these enzymes. The large fragment of the vector and the target gene fragment were recovered respectively, and the recovered fragments were ligated with T4 DNA ligase and transformed into Escherichia coli DH5α. After identification by colony PCR, the positive monoclonal bacterial solution was sequenced for verification.
[0186] 2. Transformation of Pichia pastoris
[0187] The recombinant plasmids were first linearized with Sac I, and 1 ml of single-stranded DNA sample was boiled for 5 minutes and then rapidly cooled on ice. The samples were kept on ice. Competent yeast cells were centrifuged, and LiCl was removed with a pipette. 240 μl of 50% polyethylene glycol, 36 μl of 1 M LiCl, 25 μl of 2 mg/ml single-stranded DNAs, and plasmid DNAs (5 to 10 μg) in 50 μl of sterile water were sequentially added. Each tube was vortexed vigorously until the cell pellet was completely mixed (for about 1 minute). The test tubes were incubated at 30° C. for 30 minutes, and underwent a thermal shock in a water bath at 42° C. for 20 to 25 minutes. Cells were pelleted by centrifugation. The pellet was resuspended in 1 ml of YPD and incubated at 30° C. with oscillation. After 1 hour and 4 hours, 25 to 100 μl were inoculated on the YPD plates comprising an appropriate concentration of Zeocin™. The plates were incubated at 30° C. for 2 to 3 days.
[0188] 10 single colonies were selected for enrichment culture, yeast chromosomal DNAs were extracted, and positive recombinant cells were detected by PCR. PCR identification was usually performed using pPICZαA universal primers. If the yeast expression vector pPICZαA was used as the template, a target fragment of about 588 bp can be amplified; and if pPICZαA-FTCD was used as the template, a target fragment with a target band size plus 588 bp can be amplified.
[0189] 3. Enzyme Expression and Toxin Treatment
[0190] The screened positive yeast single colony (X33/pPICZαA-FTCD) and the negative yeast single colony (X33/pPICZαA) were respectively inoculated into 25 ml of BMGY medium, and cultured at 28° C. to 30° C. until OD600 was 2 to 6. The culture was centrifuged at room temperature, the supernatant was discarded, the cells were collected, the cells were resuspended in BMMY liquid medium to about OD600=1, transferred to a 500 ml Erlenmeyer flask, and cultured at 28° C. to 30° C., and methanol was added every 24 h to a final concentration of 0.5% to maintain induced expression. After 48 h of induction, the culture solution was aliquoted into 5 ml to 15 ml centrifuge tubes, and various trichothecenes were added to a final concentration of 25 μg/ml, the induction was continued for 48 h to 72 h, and the culture were collected for LC-HRMS analysis.
[0191] At the same time, after the positive yeast single colony (X33/pPICZαA-FTCD) and the negative yeast single colony (X33/pPICZαA) were induced for expressing proteins for 48 h, the culture was diluted with the medium at dilutions of 1, ⅕ and 1/20 (initial OD=0.01), and cultured on YPDA solid media with 400 μM DON and without DON for 5 days, and the growth was observed. The tolerances to DON were compared between transgenic yeast overexpressing active polypeptide and transgenic yeast with the blank vector.
[0192] 4. LC-HRMS
[0193] The aliquoted samples were centrifuged, and the supernatant was discarded. The samples were quickly frozen in liquid nitrogen, a little quartz sand was added, and after grinding with a plastic grinding rod, 1.3 ml of pre-cooled 75% methanol aqueous solution (comprising 0.1% formic acid) was added. The mixture was vibrated for 10 s, sonicated for 30 min at room temperature, and the supernatant was taken and transferred to a new centrifuge tube. The supernatant was concentrated in vacuo to a dry powder. Before injection, the dry powder was resuspended with 100 μL of 20% acetonitrile solution, filtered through a 0.22 μm filter membrane, and transferred to an injection vial for LC-HRMS detection. The detection method was the same as above.
[0194] 5. Experimental Results
[0195] 5.1 LC-HRMS Results
[0196] The LC-HRMS results were shown in
[0197] The results of LC-HRMS detection showed that transfer of the de-epoxidase gene into Pichia pastoris can achieve efficient catalysis of conversion of trichothecene mycotoxins (comprising DON, 3-DON, 15-ADON, FUS-X, NIV, T-2, HT-2, and DAS) to glutathione adducts. Transgenic yeast had improved ability of toxin tolerance, demonstrating that FTCD can take a trichothecene mycotoxin as a substrate and catalyze it into the corresponding GSH adduct, thereby playing a role in detoxification in vivo.
[0198] 5.2 Experimental Results of DON Tolerance of Transgenic Yeast
[0199] The growth viabilities of transgenic yeast overexpressing FTCD and transgenic yeast with the blank vector were compared on YPDA media with/without DON. A series of 1, ⅕, and 1/20-fold dilutions of yeast cultures with induced protein expression were added to yeast media (initial OD=0.01), and grown at 30° C. for 5 days, and the growth was observed. The results were shown in
[0200] In the DON tolerance experiment of transgenic yeast, it was found that on the YPDA media comprising 400 μM DON, the growth viability of the transgenic yeast comprising FTCD was significantly higher than that of the transgenic yeast with the blank vector, further indicating that FTCD can be expressed in yeast and can catalyze the reaction between glutathione and a trichothecene such as DON for detoxification, thereby improving the tolerance of yeast to DON.
[0201] VI. Functional Analysis of the Gene of Homologous Sequences
[0202] On the basis of the sequence (SEQ ID NO: 36) of the de-epoxidase gene derived from Thinopyrum, blastn alignment was performed by NCBI, and no annotated highly homologous gene was found under default parameters. However, according to the information that there were homologous genes among Epichloë sp., the inventor jointly searched the genome databases of other laboratories and obtained 11 sequences derived from this genus, as set forth in SEQ ID NOs: 60-70 respectively. As shown in
[0203] Using the same method as described above, these genes were transferred into yeast cells respectively, and expressed as corresponding proteins having amino acid sequences as set forth in SEQ ID Nos: 25-35 respectively. Analysis was performed using LC-HRMS. As shown in
[0204] On the basis of the above analysis, the inventor further analyzed the conservation between the proteins produced by these homologous genes, and obtained a polypeptide fragment having an amino acid sequence at positions 25-62, a polypeptide fragment having an amino acid sequence at positions 92-110, and a polypeptide fragment having an amino acid sequence at positions 144-184.
[0205] VII. Research on Mutation of FTCD
[0206] Using the Targeting Induced Local Lesions IN Genomes technology (TILLING technology), random mutation was performed on the de-epoxidase gene (with a sequence as set forth in SEQ ID NO: 36) derived from Thinopyrum ponticum to obtain 22 mutants of which the amino acid sequences were changed. The amino acid sequences of these mutants were shown in SEQ ID Nos: 3-24, respectively. After functional analysis, the original epoxy group-removing activity was retained to varying degrees in the 22 mutants. There were two termination mutations, terminating at amino acids 209 and 243, respectively, but the two termination mutations would not lead to complete loss of the enzyme's function. Therefore, it was suggested that the functional domain of this enzyme was mainly at the N-terminal.
[0207] After sequence homology analysis, two relatively conserved regions were found, i.e., a region at positions 92-104 and a region at positions 144-184. For the functions of these two conserved regions, it was speculated that they may be important regions related to catalytic activity. In the region between these two regions, there was a large variation among different species. Therefore, it was speculated that the region between these two conserved regions may be a linking region.
[0208] In order to verify the above speculation, the inventor designed a series of deletion mutants for verification based on the mutant materials obtained by screening the Tilling population in the early stage. Specifically, the SEQ ID NO: 36 sequence was taken as a template to design the corresponding specific primers comprising sequences homologous to the cloning vector, and the specific mutant types were as follows:
TABLE-US-00004 TABLE 1 Deletion mutant gene types Position information of Position information corresponding amino acids No. of gene fragments of polypeptides 1 Full length 1-281 2 1-270 bp 1-90 3 1-570 bp 190 4 1-624 bp 1-208 5 1-726 bp 1-242 6 58-843 bp 20-281 7 118-843 bp 40-281 8 238-843 bp 80-281 9 283-843 bp 95-281 10 298-843 bp 100-281 11 448-843 bp 150-281 12 274-552 bp 91-184 13 274 to 312 bp + a spacer 92-104 + linker1 + 144-184 sequence + 430 to 552 bp 14 274 to 312 bp + a spacer 92-104 + linker2 + 144-184 sequence + 430 to 552 bp 15 274 to 312 bp + a spacer 92-104 + linker3 + 144-184 sequence + 430 to 552 bp 16 274 to 312 bp + a spacer 92-104 + linker4 + 144-184 sequence + 430 to 552 bp 17 274 to 312 bp + an artificial 92-104 + linker5 + 144-184 spacer sequence + 430 to 552 bp Notes: Linker 1 corresponds to the amino acid sequence at positions 105-142 in SEQ ID NO: 25; Linker 2 corresponds to the amino acid sequence at positions 103-141 in SEQ ID NO: 26; Linker 3 corresponds to the amino acid sequence at positions 107-148 in SEQ ID NO: 28; Linker 4 corresponds to the amino acid sequence at positions 106-143 in SEQ ID NO: 30; and Linker 5 is the artificial sequence GGGSGGSGG.
[0209] The specific experimental procedures were as follows:
[0210] 1. The gene sequences corresponding to the above-mentioned deletion mutants were obtained by PCR, constructed into plasmid pET28a by the designed NcoI and BamHI restriction sites, transformed into Escherichia coli DH5α, identified by colony PCR and verified by sequencing. The correct recombinant expression vector plasmid was transformed into competent cells of Escherichia coli expression strain BL21 (DE3). The transformed cells were shaken at 37° C. for 4 h to induce protein expression with 0.5 mmol/L IPTG, and the bacterial cells were collected and resuspended in PBS. After ultrasonication, the supernatant was collected, and the supernatant was purified by a Ni column and a molecular sieve, and the purified protein was quantified by the BCA protein quantification method.
[0211] 2. In Vitro Enzymatic Reaction
[0212] DON, 3-DON, and 15-ADON toxins (1 mg) were dissolved in freshly prepared GSH (30.7 mg, 100 μmol) in PBS buffer respectively, and the same amount of purified proteins were added based on the concentrations of proteins purified in vitro from several different FTCD deletion mutants, and incubated in a water bath at 25° C. for 24 h.
[0213] 3. LC-HRMS (/MS) Analysis
[0214] The in vitro reaction solution was filtered through a 0.22 μm filter membrane, and transferred to an injection vial for LC-HRMS detection. PRM mode was used to quantify the relative abundance of toxins and their derivatives in a sample. The enzyme activity was calculated according to the amount of substrate conversion per unit time, and based on this result, the effect of different deletion mutations on protein activity was determined. DON, 3-DON, and 15-ADON toxins (1 mg) were dissolved in freshly prepared GSH (30.7 mg, 100 μmol) in PBS buffer respectively, and the same amount of purified proteins were added based on the concentrations of proteins purified in vitro from several different FTCD deletion mutants, and incubated in a water bath at 25° C. for 24 h. Samples were taken for LC-HRMS analysis, and the effect of different deletion mutations on enzyme activity was shown in Table 2.
TABLE-US-00005 TABLE 2 Experimental results of enzyme activity of different mutants Amino acid Specific enzyme activity (U/g) sequence 3- 15- No. information DON ADON ADON Conclusion 1 Full length 391.23 376.37 385.69 2 1-90 0 0 0 None 3 1-190 321.33 305.32 320.29 High 4 1-208 321.33 317.01 329.36 High 5 1-242 316.32 329.10 334.05 High 6 20-281 302.33 301.27 319.11 High 7 40-281 305.36 304.84 307.45 High, and decreased as compared with 3-5 8 80-281 294.63 282.45 283.12 High, and decreased as compared with 3-5 9 95-281 20.45 33.22 28.28 Very low 10 100-281 22.01 27.38 19.19 Very low 11 150-281 0 0 0 None 12 92-184 250.21 245.10 249.17 Lower than 6-7, but still having relatively high activity 13 92-104 + 208.78 212.67 195.37 Slightly lower than linker1 + 11, but still having 144-184 relatively high activity 14 92-104 + 213.45 199.63 199.55 Slightly lower than linker2 + 11, but still having 144-184 relatively high activity 15 92-104 + 211.97 204.83 214.58 Slightly lower than linker3 + 11, but still having 144-184 relatively high activity 16 92-104 + 198.67 190.64 195.77 Slightly lower than linker4 + 11, but still having 144-184 relatively high activity 17 92-104 + 169.37 176.48 169.97 High linker5 + 144-184
[0215] It can be seen from Table 2 that the mutants with deletion of amino acids 1 to 90 had a little effect on the enzyme activity, while the deletion of the first 95 amino acids has a greater effect on the enzyme activity and led to greatly reduced enzyme activity, and the expressed protein was inactive if the first 150 amino acids were deleted. On the other hand, it was found that the sequence comprising the conserved region speculated by the present invention, i.e., the mutant comprising amino acids 92 to 184, had a high level of specific enzyme activity although the activity was affected. Hence, this was substantially in good agreement with what was speculated.
[0216] In addition, in the case of mutation of the speculated linking region, the sequence of this region of Thinopyrum ponticum was substituted with corresponding sequences of other genera respectively, and it was found that the activity remained substantially unchanged. Further substitution of this region with the artificially designed linker sequence GGGSGGSGG also had little effect on the enzyme activity. These results were substantially in good agreement with the predictions.
[0217] 2. Mutation Analysis of Critical Amino Acids in Conserved Regions
[0218] On the basis of determining the critical regions of enzyme activity, the inventor further mutated the amino acids in the two conserved regions to expect to find critical amino acids.
[0219] Specifically, gene sequences having different mutation combinations were obtained by gene synthesis. These gene sequences were expressed in Escherichia coli and purified. The resulting mutant polypeptides were used for the in vitro enzymatic reaction, and the enzyme activity was analyzed by LC-HRMS (/MS). The results were shown in Table 3.
TABLE-US-00006 TABLE 3 Experiment on the effect of amino acid mutations in conserved regions on the enzyme activity Mutation types of functional Specific enzyme activity (U/g) No. domains DON Description 1 Wild type 269.43 Corresponding to positions 92 to 184 of SEQ ID NO: 1 2 S94G 203.79 High 3 F95L 152.39 Slightly low as compared with other mutants having a single mutation, but still maintaining most of the activity 4 A98V 8.97 Very low activity 5 A99V 15.81 Very low activity 6 Y100H 102.93 Slightly low as compared with other mutants having a single mutation, but still maintaining about half of the activity 7 L101V 26.47 Very low activity 8 T104S 8.73 Very low activity 9 D145E 36.73 Very low activity 10 N150Y 29.33 Very low activity 11 S151G 196.71 High 12 V153A 35.65 Very low activity 13 D154E 28.99 Very low activity 14 A155V 206.55 High 15 A156V 32.14 Very low activity 16 F157C 18.63 Very low activity 17 T158Q 185.76 High 18 T158N 194.28 High 19 A159T 27.45 Very low activity 20 H160R 26.66 Very low activity 21 V161A 40.25 Very low activity 22 G162S 217.76 High 23 L163V 167.95 Slightly low as compared with other mutants having a single mutation, but still maintaining most of the activity 24 M164L 19.63 Very low activity 25 V165L 165.44 Slightly low as compared with other mutants having a single mutation, but still maintaining most of the activity 26 P169R 38.21 Very low activity 27 L170V 19.67 Very low activity 28 P172V 10.34 Very low activity 29 T174S 204.27 High 30 A175V 183.34 High 31 D176E 24.98 Very low activity 32 T178I 100.49 Slightly low as compared with other mutants having a single mutation, but still maintaining about half of the activity 33 K179E 27.65 Very low activity 34 R184P 18.96 Very low activity 35 S94G + A175V 148.78 High, maintaining most of the activity 36 F95L + A175V 155.21 High, maintaining most of the activity 37 S94G + Y100H 112.16 Slightly low, but still maintaining half of the activity 38 S94G + S151G 144.51 High, maintaining most of the activity 39 S94G + A155V 162.43 High, maintaining most of the activity 40 S94G + L163V 145.48 High, maintaining most of the activity 41 S94G + T174S 155.58 High, maintaining most of the activity 42 S94G + T178I 114.29 Maintaining half of the activity 43 F95L + L163V 104.31 Slightly low, but still maintaining half of the activity 44 F95L + T158Q 151.57 High, maintaining most of the activity 45 F95L + T174S 145.07 High, maintaining most of the activity 46 F95L + V165L 102.30 Slightly low, but still maintaining half of the activity 47 F95L + T178I 70.09 Relatively low, with less than half of the activity of the wild type 48 F95L + Y100H 81.42 Relatively low, with less than half of the activity of the wild type 49 F95L + S151G 157.81 High, maintaining most of the activity 50 Y100H + T158Q 132.45 High, maintaining most of the activity 51 Y100H + A175V 127.94 High, maintaining most of the activity 52 Y100H + L163V 97.93 Relatively low, with less than half of the activity of the wild type 53 Y100H + G162S 113.19 Slightly low, but still maintaining half of the activity 54 Y100H + T178I 58.11 Very low 55 Y100H + A155V 102.65 Slightly low, but still maintaining half of the activity 56 V165L + T174S 142.16 High, maintaining most of the activity 57 V165L + T178I 90.56 Relatively low, with less than half of the activity of the wild type 58 S151G + T178I 150.27 High 59 S94G + T158Q 161.94 High 60 A155V + G162S 173.73 High 61 A155V + V165L 149.12 High, maintaining most of the activity 62 A155V + T174S 159.77 High 63 A155V + A175V 156.82 High 64 A155V + T178I 163.51 High 65 S151G + T158N 154.05 High 66 S151G + L163V 148.53 High, maintaining most of the activity 67 S151G + V165L 149.33 High, maintaining most of the activity 68 S151G + A175V 166.06 High 69 L163V + V165L 140.65 High, maintaining most of the activity 70 L163V + T174S 156.79 High, maintaining most of the activity 71 L163V + A175V 159.05 High, maintaining most of the activity 72 L163V + T178I 67.94 Relatively low, with less than half of the activity of the wild type 73 S94G + T158Q + G162S 149.64 High, maintaining most of the activity 74 S94G + T158N + G162S 134.55 High, maintaining most of the activity 75 S94G + F95L + Y100H 100.96 Relatively low, with less than half of the activity of the wild type 76 F95L + Y100H + G162S 95.95 Relatively low, with less than half of the activity of the wild type 77 S94G + Y100H + S151G 86.79 Relatively low, with less than half of the activity of the wild type 78 S94G + S151G + A155V 150.37 High, maintaining most of the activity 79 S94G + A155V + T174S 163.93 High, maintaining most of the activity 80 S94G + L163V + A175V 142.37 High, maintaining most of the activity 81 S94G + T174S + A175V 146.45 High, maintaining most of the activity 82 S94G + V165L + T178I 152.06 High, maintaining most of the activity 83 F95L + Y100H + A175V 92.06 Relatively low, with less than half of the activity of the wild type 84 F95L + T158Q + G162S 158.26 High, maintaining most of the activity 85 F95L + T174S + T178I 86.21 Relatively low, with less than half of the activity of the wild type 86 S94G + V165L + T174S 148.93 High, maintaining most of the activity 87 F95L + G162S + V165L 174.58 Slightly low, but still maintaining half of the activity 88 F95L + Y100H + S151G 201.97 Relatively low, with less than half of the activity of the wild type 89 F95L + S151G + T158Q 183.79 High, maintaining most of the activity 90 F95L + L163V + V165L 196.22 Relatively low, with less than half of the activity of the wild type 91 F95L + G162S + L163V 122.97 Slightly low, but still maintaining half of the activity 92 S94G + Y100H + T158Q 111.39 Slightly low, but still maintaining half of the activity 93 F95L + S151G + T158N 133.72 High, maintaining most of the activity 94 Y100H + T158Q + G162S 116.46 Slightly low, but still maintaining half of the activity 95 Y100H + T174S + A175V 107.66 Slightly low, but still maintaining half of the activity 96 Y100H + A175V + T178I 49.34 Relatively low, with less than half of the activity of the wild type 97 Y100H + A155V + L163V 96.46 Relatively low, with less than half of the activity of the wild type 98 S151G + T158N + G162S 149.59 High, maintaining most of the activity 99 S151G + L163V + A175V 168.97 High, maintaining most of the activity 100 S151G + V165L + T178I 73.56 Relatively low, with less than half of the activity of the wild type 101 S151G + A175V + T178I 57.24 Very low 102 L163V + V165L + T174S 104.25 Slightly low, but still maintaining half of the activity 103 L163V + T174S + A175V 137.13 High, maintaining most of the activity 104 S94G + A155V + T158Q 149.59 High, maintaining most of the activity 105 S94G + L163V + V165L 109.29 Slightly low, but still maintaining half of the activity 106 S94G + T174S + T178I 114.18 Slightly low, but still maintaining half of the activity 107 S94G + F95L + L163V 93.66 Relatively low, with less than half of the activity of the wild type 108 F95L + A155V + T178I 78.62 Relatively low, with less than half of the activity of the wild type 109 F95L + T158Q + L163V 127.47 Slightly low, but still maintaining half of the activity 110 F95L + T174S + A175V 144.93 High, maintaining most of the activity 111 F95L + V165L + T174S 104.66 Slightly low, but still maintaining half of the activity 112 Y100H + A155V + T178I 59.33 Relatively low, with less than half of the activity of the wild type 113 F95L + Y100H + L163V 62.31 Very low 114 Y100H + S151G + A155V 139.45 High, maintaining most of the activity 115 A155V + L163V + T174S 146.42 High, maintaining most of the activity 116 A155V + T174S + T178I 87.87 Relatively low, with less than half of the activity of the wild type 117 Y100H + A155V + V165L 93.59 Relatively low, with less than half of the activity of the wild type 118 S151G + T158N + V165L 142.27 High, maintaining most of the activity 119 S151G + L163V + T174S 136.38 High, maintaining most of the activity 120 S151G + V165L + A175V 158.62 High, maintaining most of the activity 121 V165L + T174S + A175V 158.35 High, maintaining most of the activity 122 S151G + V165L + T178I 86.54 Relatively low, with less than half of the activity of the wild type 123 S151G + A175V + T178I 72.57 Relatively low, with less than half of the activity of the wild type 124 S94G + F95L + Y100H + L163V 55.92 Very low 125 S94G + S151G + A155V + T174S 130.29 High, maintaining most of the activity 126 S94G + F95L + Y100H + T158Q 89.79 Relatively low, with less than half of the activity of the wild type 127 S94G + F95L + Y100H + S151G 75.05 Relatively low, with less than half of the activity of the wild type 128 S94G + F95L + Y100H + T174S 76.21 Relatively low, with less than half of the activity of the wild type 129 S94G + F95L + S151G + A155V 136.63 High, maintaining most of the activity 130 S94G + F95L + S151G + T158N 152.75 High, maintaining most of the activity 131 S94G + F95L + S151G + T174S 135.95 High, maintaining most of the activity 132 S94G + F95L + S151G + L163V 106.16 Slightly low, but still maintaining half of the activity 133 S94G + F95L + A155V + T158Q 151.87 High, maintaining most of the activity 134 S94G + F95L + A155V + V165L 112.11 Slightly low, but still maintaining half of the activity 135 F95L + Y100H + S151G + T158Q 61.99 Relatively low, with less than half of the activity of the wild type 136 S94G + Y100H + T158Q + T174S 70.93 Relatively low, with less than half of the activity of the wild type 137 F95L + Y100H + G162S + T174S 71.33 Relatively low, with less than half of the activity of the wild type 138 S94G + F95L + Y100H + T178I 50.39 Relatively low, with less than half of the activity of the wild type 139 S94G + Y100H + S151G + T158Q 57.60 Relatively low, with less than half of the activity of the wild type 140 F95L + Y100H + S151G + T174S 64.47 Relatively low, with less than half of the activity of the wild type 141 S94G + Y100H + T158N + L163V 69.73 Relatively low, with less than half of the activity of the wild type 142 F95L + Y100H + A155V + T174S 70.51 Relatively low, with less than half of the activity of the wild type 143 F95L + Y100H + T158N + T174S 52.88 Relatively low, with less than half of the activity of the wild type 144 S94G + F95L + S151G + G162S 132.06 High, maintaining most of the activity 145 F95L + S151G + T158Q + G162S 142.63 High, maintaining most of the activity 146 F95L + Y100H + T158Q + T178I 39.33 Very low 147 S94G + Y100H + T158Q + G162S 59.90 Relatively low, with less than half of the activity of the wild type 148 F95L + Y100H + T158Q + A175V 60.04 Relatively low, with less than half of the activity of the wild type 149 F95L + A155V + G162S + T178I 67.25 Relatively low, with less than half of the activity of the wild type 150 F95L + T158N + G162S + T174S 145.33 High, maintaining most of the activity 151 F95L + T158Q + G162S + A175V 148.73 High, maintaining most of the activity 152 F95L + T158Q + V165L + T174S 99.76 Slightly low, but still maintaining half of the activity 153 Y100H + S151G + G162S + T178I 38.73 Relatively low, with less than half of the activity of the wild type 154 F95L + Y100H + A155V + T158Q 77.29 Relatively low, with less than half of the activity of the wild type 155 S94G + A155V + T158Q + G162S 149.04 High, maintaining most of the activity 156 S94G + S151G + T158Q + T174S 150.51 High, maintaining most of the activity 157 S94G + A155V + T158N + G162S 56.49 Relatively low, with less than half of the activity of the wild type 158 S151G + A155V + G162S + T178I 49.46 Very low 159 S94G + T158Q + G162S + L163V 178.68 High, maintaining most of the activity 160 F95L + A155V + T158N + T174S 113.61 High, maintaining most of the activity 161 Y100H + G162S + T174S + T178I 71.33 Relatively low, with less than half of the activity of the wild type 162 S94G + T158N + V165L + T174S 141.18 High, maintaining most of the activity 163 S151G + T158Q + T174S + T178I 56.45 Very low 164 Y100H + S151G + A155V + L163V 52.39 Relatively low, with less than half of the activity of the wild type 165 S151G + A155V + T158Q + L163V 159.93 High, maintaining most of the activity 166 A155V + T158Q + G162S + A175V 133.41 High, maintaining most of the activity 167 A155V + T158Q + G162S + T174S 130.05 High, maintaining most of the activity 168 T158N + G162S + L163V + T178I 29.74 Very low 169 A155V + G162S + L163V + V165L 102.12 Slightly low, but still maintaining half of the activity 170 S151G + A155V + T174S + T178I 54.79 Very low 171 S151G + T158Q + V165L + A175V 145.16 High, maintaining most of the activity 172 S151G + Y100H + L163V + A175V 59.04 Relatively low, with less than half of the activity of the wild type 173 S151G + A155V + A175V + T178I 137.81 High, maintaining most of the activity 174 S151G + T158N + V165L + T174S 173.16 High, maintaining most of the activity 175 Y100H + S151G + A155V + T158Q 55.38 Very low 176 Y100H + A155V + T158Q + L163V 54.68 Relatively low, with less than half of the activity of the wild type 177 Y100H + T158Q + G162S + L163V 64.47 Relatively low, with less than half of the activity of the wild type 178 Y100H + T158N + V165L + A175V 68.57 Relatively low, with less than half of the activity of the wild type 179 Y100H + A155V + T174S + T178I 38.45 Relatively low, with less than half of the activity of the wild type 180 Y100H + T158N + T174S + A175V 72.46 Relatively low, with less than half of the activity of the wild type 181 Y100H + A155V + V165L + T178I 60.78 Relatively low, with less than half of the activity of the wild type 182 Y100H + T158Q + T174S + T178I 63.48 Relatively low, with less than half of the activity of the wild type 183 Y100H + A155V + T158N + G162S 65.71 Relatively low, with less than half of the activity of the wild type 184 Y100H + T158N + L163V + V165L 41.91 Very low 185 S151G + A155V + T158Q + V165L 130.59 High, maintaining most of the activity 186 S151G + T158Q + G162S + L163V 131.98 High, maintaining most of the activity 187 S151G + A155V + L163V + T174S 144.33 High, maintaining most of the activity 188 S151G + G162S + T174S + T178I 61.25 Relatively low, with less than half of the activity of the wild type 189 S151G + T158N + V165L + A175V 138.02 High, maintaining most of the activity 190 A155V + T158Q + G162S + L163V 122.29 High, maintaining most of the activity 191 A155V + T158N + V165L + A175V 114.30 High, maintaining most of the activity 192 A155V + G162S + L163V + T178I 53.78 Very low 193 A155V + L163V + A175V + T178I 52.07 Very low 194 A155V + T158N + T174S + T178I 81.15 Relatively low, with less than half of the activity of the wild type 195 T158Q + G162S + L163V + T174S 129.29 High, maintaining most of the activity 196 T158Q + V165L + A175V + T178I 67.25 Relatively low, with less than half of the activity of the wild type 197 T158Q + G162S + T174S + T178I 50.55 Relatively low, with less than half of the activity of the wild type 198 T158Q + L163V + T174S + A175V 127.24 High, maintaining most of the activity 199 T158N + L163V + T174S + T178I 100.35 Relatively low, with less than half of the activity of the wild type 200 T158N + G162S + V165L + A175V 119.25 High, maintaining most of the activity 201 S94G + F95L + Y100H + T158Q + 41.91 Very low L163V 202 S94G + F95L + T158N + G162S + 101.19 Slightly low, but still maintaining half of T174S the activity 203 F95L + A155V + G162S + V165L + 37.24 Very low T178I 204 F95L + Y100H + T158Q + G162S + 72.29 Relatively low, with less than half of the T174S activity of the wild type 205 F95L + Y100H + T158Q + L163V + 21.06 Very low A175V 206 S94G + A155V + G162S + L163V + 73.64 Relatively low, with less than half of the T174S + T178I activity of the wild type 207 F95L + Y100H + A155V + G162S + 63.9 Relatively low, with less than half of the L163V + T178I activity of the wild type 208 F95L + Y100H + S151G + T158Q + 81.3 Relatively low, with less than half of the G162S + T174S + T178I activity of the wild type 209 S94G + Y100H + A155V + T158N + 15.87 Very low G162S + L163V + V165L + A175V 210 F95L + Y100H + S151G + T158N + 20.34 Very low activity G162S + T174S + T178I 211 S94G + Y100H + A155V + T158Q + 48.67 Very low G162S + L163V + V165L + A175V 212 G162S + L163V + V165L + T174S + 103.33 Slightly low, but still maintaining half of A175V the activity 213 T158N + G162S + V165L + A175V + 20.63 Very low T178I 214 T158Q + T174S + A175V + T178I 101.78 Slightly low, but still maintaining half of the activity 215 G162S + L163V + V165L + T178I 13.37 Very low 216 L163V + V165L + T174S + A175V 97.33 Slightly low, but still maintaining half of the activity 217 L163V + T174S + A175V + T178I 60.85 Relatively low, with less than half of the activity of the wild type 218 T158N + T174S + A175V + T178I 56.64 Relatively low, with less than half of the activity of the wild type
[0220] There were some variable sites in the conserved sequence of FTCD, wherein after the amino acids at positions 94, 95, 100, 151, 155, 158, 162, 163, 165, 174, 175 and 178 were changed, FTCD can still maintain a certain activity. Among these variable sites, amino acid changes at different sites had different effects on the activity of FTCD, wherein when the amino acids at positions 100 and 178 were changed, the activity of FTCD was greatly affected, and the activity can be reduced by about 60%. After other variable sites were changed, the activity of FTCD can remain 50% or more.
[0221] VIII. Study on the Expression of the De-Epoxidase Gene of Epichloë in Different Engineered Microorganisms
[0222] The strains, vectors or plasmids used in this example were all preserved in our laboratory unless otherwise stated. The plasmid pMD19-T-FTCD comprises a de-epoxidase gene derived from Epichloë, having a sequence as set forth in SEQ ID NO: 68.
[0223] 8.1 Efficient Secretion and Expression of the De-Epoxidase Gene of Epichloë in Bacillus subtilis
[0224] 8.1.1 Preparation of Competent Cells
[0225] The bacterial solution of Bacillus subtilis was spread on an LB solid medium, and cultured at 37° C. overnight. Single colonies were picked and inoculated into 5 ml of GMI medium. The culture was shaken overnight at 30° C. and 130 r/min. 2 ml of overnight culture was pipetted into 18 ml of GMI medium, and cultured at 37° C. and 250 r/min for 3.5 h. The above culture was transferred into 10 ml of GMII medium in the same proportion, and cultured at 37° C. and 130 r/min for 1.5 h. 1 mL of the above-mentioned second-passage culture was taken and centrifuged at 5,000 r/min at room temperature for 5 min, and the bacterial pellet was resuspended with 1/10 volume of the supernatant, obtaining the competent cells of Bacillus subtilis.
[0226] 8.1.2 Construction of Recombinant Expression Vector pHT43-FTCD
[0227] The primers with BamHI and SamI restriction sites were designed according to the sequence of expression vector pHT43, and the primer sequences were as follows (underlined sequences indicate the restriction sites):
TABLE-US-00007 Forward primer: 5′-CGTAGGATCCATGGCCACCCCCACCTCCAC-3′ Reverse primer: 5′-CTGCCCCGGGCTTCACCTCGGCATACTTGTC-3′
[0228] PCR amplification was performed using plasmid pMD19-T-FTCD as a template. The amplification product was detected by 1% agarose gel electrophoresis, and a target fragment was recovered by cutting the gel; the target fragment and pHT43 vector were digested by double enzymes, BamHI and SamI, respectively, followed by gel recovery and ligation with T4 ligase; the ligation product was mixed with competent cells of Bacillus subtilis to a final concentration of 1 μg/mL. After mixing well, the mixture was placed in a water bath at 37° C. and left to stand for 30 to 60 min, and shaken at 37° C. and 220 r/min for 4 h. After shaking, the mixture of the recombinant plasmid and the competent cells were spread on a chloramphenicol-resistant medium and cultured overnight at 37° C.; single colonies were picked and identified by colony PCR and double digestion to obtain a target gene of about 900 bp and a pHT43 vector backbone of about 8,000 bp. Further sequencing was performed to verify that the sequence and the reading frame of the recombinant expression vector pHT43-FTCD were correct.
[0229] 8.1.3 Induced Expression of Polypeptides
[0230] The target protein in Bacillus subtilis was mainly secreted into the medium in a soluble state. After the positive bacteria comprising the recombinant plasmids were subjected to expanded culture, they were shaken in LB broth media until the OD600 of the bacteria was 0.6 to 0.8. 1 mL of the culture was taken out and centrifuged at room temperature for 2 min, the supernatant was discarded, and the bacterial pellet was resuspended in 100 μl of 1× loading buffer. IPTG was added to the remaining culture to a final concentration of 0.5 mM, and the fusion protein was induced to express by shaking at 37° C. and 220 r/min for 8 h. Samples were taken at 4 h and 8 h, respectively, and centrifuged to obtain a supernatant for SDS-PAGE and western blot detection. The results were shown in
[0231] 8.1.4. The Reaction of Removing an Epoxy Group of Vomitoxin Catalyzed by the Fermentation Supernatant
[0232] 8.1.4.1 Experimental Methods:
[0233] 8.1.4.1.1 In vitro catalysis of reaction by the fermentation supernatant:
[0234] DON, 3-DON, 15-ADON, NIV, DAS, HT-2, and T-2 toxins (1 mg) were dissolved in freshly prepared GSH (30.7 mg, 100 μmol) in PBS buffer respectively, and the fermentation supernatant that was concentrated 10 times using an ultrafiltration membrane was added, and incubated in a water bath at 20° C. for 24 h.
[0235] 8.1.4.1.2 LC-HRMS (/MS) Analysis
[0236] The in vitro reaction solution was filtered through a 0.22 μm filter membrane, and transferred to an injection vial for LC-HRMS detection.
[0237] Chromatography was performed on a reverse phase XBridge C18, with an inner diameter of 150><2.1 mm, and a particle size of 3.5 μm (Waters, Dublin, Ireland), at a column temperature of 35° C. The flow rate was 300 μL min.sup.−1, and the injection volume was 3 μL. Mobile phase: A: 0.1% aqueous acetic acid, B: acetonitrile; elution gradient: A=90% at 0 to 0.2 min; A gradually decreased to 10% at 0.2 to 6 min; A=10% at 6 to 8 min; A gradually increased to 90% at 8.1 min; and A=90% at 8.1 to 10 min.
[0238] Xcalibur 2.1.0 (Thermo Fisher Scientific, San Jose, Calif., USA) were used for analysis of data of LC-HRMS (/MS). Extracted ion chromatograms (EICs) of toxins and their derivatives were investigated using the extracted chromatographic peak shape, retention time (±0.2 min) and mass (±5 ppm) of the bioconversion products. According to secondary spectra and basic structures of the substances, the neutral loss was analyzed, and chemical structures were inferred.
[0239] 8.1.4.2 Experimental Results
[0240] The active protein contained in the fermentation supernatant produced by the Bacillus subtilis expression system can efficiently catalyze trichothecene mycotoxins (comprising DON, 3DON, 15ADON, FUS-X, NIV, T2, H-T2, DAS, and the like) into glutathione adducts in vitro, and it can be seen from the secondary spectrum that the formation of the adducts destroyed the epoxy ring structure playing a major role in the toxicity of trichothecenes, which can greatly reduce the toxicity of the toxins.
[0241] 8.2 Efficient Expression of the De-Epoxidase Gene of Epichloë in Lactobacillus
[0242] Unless specifically stated otherwise, the contents in this step is the same as in 8.1.
[0243] 8.2.1. Preparation of competent cells
[0244] A bacterial solution of Lactobacillus MG1363 in glycerin was spread on an GM17 solid medium and cultured at 30° C. for 24 h; single colonies were picked and inoculated into 3 ml of GSGM17B medium. The bacteria were cultured by standing at 30° C. for 12 h; 2 ml of overnight culture was pipetted into 100 ml of GSGM17B medium, and cultured at 30° C. until OD600 was 0.3 to 0.5; the culture was centrifuged at 4° C. and 6,000 rpm for 20 min using a centrifuge to collect bacteria; the bacteria were resuspended with 100 ml of pre-cooled EPB, and centrifuged at 4° C. and 6,000 rpm for 20 min, and the supernatant was discarded; the bacteria were resuspended with 100 ml of pre-cooled EPB+EDTA, placed in an ice bath for 15 min, and centrifuged at 4° C. and 6,000 rpm for 20 min, and the supernatant was discarded; the bacteria were resuspended again with 25 ml of pre-cooled EPB, and centrifuged at 4° C. and 6,000 rpm for 20 min, and the supernatant was discarded; the bacteria were resuspended with 1 ml of pre-chilled EPB, aliquoted on ice, and stored at −80° C.
[0245] 8.2.2. Construction of Recombinant Expression Vector pMG36e-FTCD
[0246] The primers with SamI and HindIII restriction sites were designed according to the sequence of expression vector pMG36e, and the primer sequences were as follows (underlined sequences indicate the restriction sites):
TABLE-US-00008 Forward primer: 5′-AAGCTTCTAGAAATCCACCCATCGTCATCACC-3′ Reverse primer: 5′-CCCGGGTCTTCACCTCGGCATACTTGTC-3′
[0247] PCR amplification was performed using plasmid pMD19-T-FTCD as a template. The amplification product was detected by 1% agarose gel electrophoresis, and a target fragment was recovered by cutting the gel; the target fragment and pMG36e vector were digested by double enzymes, SamI and HindIII, respectively, followed by gel recovery and ligation at 16° C. overnight.
[0248] 8.2.3. Construction of Recombinant Lactobacillus by Electrotransformation
[0249] The recombinant plasmid pMG36e-FTCD was introduced into competent cells of Lactobacillus MG1363 by electrotransformation to obtain recombinant Lactobacillus. An empty vector was transformed into Lactobacillus by the same method as a control. Single colonies were randomly picked from the transformation plate and identified by colony PCR and double digestion to obtain a target gene of about 900 bp and a pMG36e vector backbone of about 3,600 bp. Further sequencing was performed to verify that the sequence and the reading frame of the recombinant expression vector pMG36e-FTCD were correct.
[0250] 8.2.4. FTCD Expression in Lactobacillus
[0251] The target protein in Bacillus subtilis was mainly secreted into the medium in a soluble state. After the positive bacteria comprising the recombinant plasmids were subjected to expanded culture, they were shaken in GSGM17B broth media until the OD600 of the bacteria was 0.6 to 0.8. 1 mL of the culture was taken out and centrifuged at room temperature for 2 min, the supernatant was discarded, and the bacterial pellet was lysed in 100 μl of 1× loading buffer. The solution was centrifuged to obtain a supernatant for SDS-PAGE and western blot detection. The results showed that a soluble protein was obtained in the medium.
[0252] 8.3 Efficient Expression of the De-Epoxidase Gene of Epichloë in Bifidobacterium (Cultured Under Anaerobic Conditions)
[0253] Unless specifically stated otherwise, the contents in this step is the same as in 8.1.
[0254] 8.3.1. Construction of a Bifidobacterium Secretory Expression Vector
[0255] According to the study results of Xun Anying, et al., a secretory expression vector was constructed. pBAD-gIIIA was used as a template to amplified a partial sequence, comprising the promoter sequence of the arabinose operon (PBAD) and the positive and negative regulator gene (araC) sequence of the promoter, without the signal peptide sequence. The amplification primer sequences were as follows (the forward primer had an Mph1103I restriction site at the 5′ terminal):
TABLE-US-00009 Forward primer: 5′-GGTGGTATGCATATGCTACTCCGTCAAGCCGT-3′; reverse primer: 5′-GTTAATTCCTCCTGTTAGCC-3′
[0256] The endogenous arabinosidase secretory signal peptide sequence of Bifidobacterium was amplified by PCR using the genomic DNA of Bifidobacterium as a template.
TABLE-US-00010 Forward primer: 5′-GGCTAACAGGAGGAATTAACCATGAATTATTTACGACAAAAA-3′; reverse primer: 5′-GTTGTTCCATGGAAGACTCCGCAAAGACCGGCATTGGCC-3′
[0257] The above-mentioned two fragments were ligated, the plasmid pBAD-gIII and the ligated fragment were digested with Mph1103I and NcoI, and then recovered and ligated to construct a plasmid, which was verified by sequencing; and the natural Bifidobacterium plasmid polymerase gene (BPP gene) was cloned, digested and ligated to the plasmid to construct the plasmid pBBADs.
[0258] 8.3.2. Construction of pBBADs-FTCD Recombinant Plasmid
[0259] PCR amplification was performed using plasmid pMD19-T-FTCD as a template. The amplification product was detected by 1% agarose gel electrophoresis, and a target fragment was recovered by cutting the gel; the target fragment and pBBADs vector were digested by double enzymes, BpiI and SpeI, followed by gel recovery and ligation at 16° C. overnight, and verification by sequencing.
[0260] 8.3.3. Construction of Recombinant Lactobacillus by Electrotransformation
[0261] Electrocompetent Bifidobacterium longum was prepared by the method described by Reyes Escogidi, et al. Single colonies were randomly picked from the transformation plate and detected by colony PCR. Further sequencing was performed to verify that the sequence and the reading frame of the recombinant expression vector were correct.
[0262] 8.3.4. Expression of the Target Protein in Bifidobacterium
[0263] Positive single colonies were picked and cultured in an MRS liquid medium for 24 h, diluted at 1:100 and then cultured to the logarithmic growth stage. The culture was induced to express proteins by adding L-arabinose to a final concentration of 0.2%, and cultured under an anaerobic condition at 37° C. for 5 to 6 h. The bacteria and the supernatant were collected and detected by SDS-PAGE. The results showed that FTCD was successfully expressed in Bifidobacterium.
[0264] 8.4 Efficient Expression of the De-Epoxidase Gene of Epichloë in Saccharomyces cerevisiae
[0265] Unless specifically stated otherwise, the contents in this step is the same as in 8.1. The Saccharomyces cerevisiae expression vector pYES2-α was constructed by PCR amplification using the pPICZαA plasmid as a template to obtain the yeast signal peptide a factor, and cloning it into the Saccharomyces cerevisiae expression vector pYES2.
[0266] 8.4.1. Construction of Recombinant Expression Vector pYES2-α-FTCD
[0267] The primers with EcoRI and XhoI restriction sites were designed according to the expression vector pYES2-α, and the primer sequences were as follows (underlined sequences indicate the restriction sites):
TABLE-US-00011 Forward primer: 5′-GCTGGAATTCATGGCCACCCCCACCTCCAC-3′ Reverse primer: 5′-CATGCTCGAGCTTCACCTCGGCATACTTGTC-3′
[0268] PCR amplification was performed using plasmid pMD19-T-FTCD as a template. The amplification product was detected by 1% agarose gel electrophoresis, and a target fragment was recovered by cutting the gel; the target fragment and pYES2-a vector were digested by double enzymes, EcoRI and XhoI, respectively, followed by gel recovery and ligation with T4 ligase; and the ligation product was mixed with DH5α. After mixing well, the mixture was placed in a water bath at 37° C. and left to stand for 30 to 60 min, and shaken at 37° C. and 220 r/min for 1 h. After shaking, the mixture of the recombinant plasmid and the competent cells were spread on an ampicillin-resistant medium and cultured overnight at 37° C.; single colonies were picked and identified by colony PCR and double digestion. Further sequencing was performed to verify that the sequence and the reading frame of the recombinant expression vector pYES2-α-FTCD were correct.
[0269] 8.4.2. Construction of Recombinant Lactobacillus by Electrotransformation
[0270] Single colonies of Saccharomyces cerevisiae INVSc1 were picked and inoculated into 5 ml of YPD liquid medium for overnight culture at 30° C.; 1 ml of culture solution was taken and transferred to 40 ml of YPD medium and cultured to A600 of 0.8 to 1.0, and centrifuged at 3,500 rpm and 4° C. for 5 min, and the supernatant was discarded; the pellet was washed twice with sterile water pre-cooled with ice, washed once again with 1 M sorbitol pre-cooled with ice, and then suspended in 150 μL of 1 M sorbitol pre-cooled with ice. 1 μg of recombinant plasmid was added to 80 μL of pre-cooled competent cells, the mixture was placed in an ice bath for 5 min, and transferred to a 0.2 cm electrotransformation cup; the electroporation apparatus was provided with an electric field strength of 1.5 kV/cm, a capacitance of 25 μF, and a resistance of 100 to 200Ω; after electric shock, 1 ml of pre-cooled 1M sorbitol solution was quickly added to the mixture, mixed well and transferred to a 1.5 ml centrifuge tube, incubated at 30° C. for 1 h, and centrifuged at room temperature and 3,000 rpm for 5 min, and 800 μL of supernatant was discarded; the remaining culture was pipetted evenly, spread on the YPDS plate, and cultured at 30° C. for 2 to 4 days.
[0271] Single colonies were randomly picked from the transformation plate and detected by colony PCR. Further sequencing was performed to verify that the sequence and the reading frame of the recombinant expression vector pBBADs-FTCD were correct.
[0272] 8.4.3. Expression of Polypeptides in Saccharomyces cerevisiae
[0273] The target protein was mainly secreted into the medium in a soluble state in Saccharomyces cerevisiae. The positive yeast cells comprising the recombinant plasmid were inoculated into 3 ml of YSD liquid medium, and cultured at 30° C. with shaking at 250 rpm for about 24 h until A600=2 to 6; 150 μL of the culture solution was taken and transferred into a fresh TPD medium and cultured at 30° C., 0.5 ml was taken every 24 h and centrifuged to collect the supernatant for SDS-PAGE detection. The results showed that FTCD can be secreted and expressed in Saccharomyces cerevisiae.
[0274] 8.5 Efficient Expression of the De-Epoxidase Gene of Epichloë in Pichia pastoris and Verification
[0275] Unless specifically stated otherwise, the contents in this step is the same as in sections 5.1 to 5.3.
[0276] 8.5.1. Construction of Pichia pastoris Expression Plasmid pPICZαA-FTCD
[0277] By designing the following primers, the deoxygenase gene derived from Epichloë was linked to EcoRI and XbaI restriction sites:
TABLE-US-00012 F: 5′-AGCTGAATTCATGGCCACCCCTACCTCCACCTC-3′ R: 5′-TTGTTCTAGATATTTAACTTCTGCATATTTATC-3′
[0278] The product was digested by double enzymes, EcoRI and XbaI, and meanwhile the expression vector pPICZαA was digested with these enzymes. The large fragment of the vector and the target gene fragment were recovered respectively, and the recovered fragments were ligated with T4 DNA ligase and transformed into Escherichia coli DH5α. After identification by colony PCR, the positive monoclonal bacterial solution was sequenced for verification.
[0279] 8.5.2. Transformation of Pichia pastoris
[0280] The recombinant plasmids were first linearized with Sac I, and 1 ml of single-stranded DNA sample was boiled for 5 minutes and then rapidly cooled on ice. The samples were kept on ice. Competent yeast cells were centrifuged, and LiCl was removed with a pipette. 240 μl of 50% polyethylene glycol, 36 μl of 1 M LiCl, 25 μl of 2 mg/ml single-stranded DNAs, and plasmid DNAs (5 to 10 μg) in 50 μl of sterile water were sequentially added. Each tube was vortexed vigorously until the cell pellet was completely mixed (for about 1 minute). The test tubes were incubated at 30° C. for 30 minutes, and underwent a thermal shock in a water bath at 42° C. for 20 to 25 minutes. Cells were pelleted by centrifugation. The pellet was resuspended in 1 ml of YPD and incubated at 30° C. with oscillation. After 1 hour and 4 hours, 25 to 100 μl were inoculated on the YPD plates comprising an appropriate concentration of Zeocin™. The plates were incubated at 30° C. for 2 to 3 days.
[0281] 10 single colonies were selected for enrichment culture, yeast chromosomal DNAs were extracted, and positive recombinant cells were detected by PCR. PCR identification was usually performed using pPICZαA universal primers. If the yeast expression vector pPICZαA was used as the template, a target fragment of about 588 bp can be amplified; and if pPICZαA-FTCD was used as the template, a target fragment with a target band size plus 588 bp can be amplified.
[0282] 8.5.3. Enzyme Expression and Toxin Treatment
[0283] The screened positive yeast single colony (X33/pPICZαA-FTCD) and the negative yeast single colony (X33/pPICZαA) were respectively inoculated into 25 ml of BMGY medium, and cultured at 28° C. to 30° C. until OD600 was 2 to 6. The culture was centrifuged at room temperature, the supernatant was discarded, the cells were collected, the cells were resuspended in BMMY liquid medium to about OD600=1, transferred to a 500 ml Erlenmeyer flask, and cultured at 28° C. to 30° C., and methanol was added every 24 h to a final concentration of 0.5% to maintain induced expression. After 48 h of induction, the culture solution was aliquoted into 5 ml to 15 ml centrifuge tubes, and various trichothecenes were added to a final concentration of 25 μg/ml, the induction was continued for 48 h to 72 h, and the culture were collected for LC-HRMS analysis.
[0284] The results of LC-HRMS detection showed that transfer of the de-epoxidase gene into Pichia pastoris can achieve efficient catalysis of conversion of trichothecene mycotoxins (comprising DON, 3-DON, 15-ADON, FUS-X, NIV, T-2, HT-2, and DAS) to glutathione adducts. Transgenic yeast had improved ability of toxin tolerance, demonstrating that FTCD can take a trichothecene mycotoxin as a substrate and catalyze it into the corresponding GSH adduct, thereby playing a role in detoxification in vivo.
[0285] 8.6 Analysis of the Content of Toxins in Feed Samples Treated with Multiple Strains.
[0286] 8.6.1. Experimental Materials
[0287] 30 feed samples were collected from Henan, Jiangsu and Anhui provinces, etc. DON, 3-ADON, 15-ADON, FUS-X, NIV, T-2 and HT-2 toxin standards, L-reduced glutathione (Sigma-Aldrich, USA), methanol (HPLC grade, CNW, Germany), acetonitrile (HPLC grade, CNW, Germany), and acetic acid (HPLC grade, Sigma-Aldrich, USA).
[0288] 8.6.2. Experimental Methods
[0289] 8.6.2.1 Analysis of Samples by LC-HRMS (/MS)
[0290] 4 g of each of 30 feed samples was weighed, ground into powder, and dissolved in 1.3 ml of pre-cooled 75% methanol aqueous solution (comprising 0.1% formic acid). The mixture was vibrated for 10 s, sonicated for 30 min at room temperature, and the supernatant was taken and transferred to a new centrifuge tube. The supernatant was concentrated in vacuo to a dry powder. Before injection, the dry powder was resuspended with 100 μL of 20% acetonitrile solution, filtered through a 0.22 μm filter membrane, and transferred to an injection vial for LC-HRMS detection.
[0291] 8.6.2.2 Treatment of Feed Samples with a Variety of Probiotics Comprising FTCD
[0292] According to the results of mass spectrometry, the one with the most serious contamination by a variety of trichothecene mycotoxins was selected as the sample to be treated. 30 g of the sample were weighed and ground into powder, 2 g of the sample was weighed and charged into a 15 ml centrifuge tube, 2 ml of PBS was added to prepare a powdery homogeneous solution, and then 5 ml of culture solution with OD600=0.8 of each of 5 kinds of transgenic probiotics comprising FTCD (in which Bifidobacterium was cultured under anaerobic conditions) and an appropriate amount of glutathione were added, and the treatment was performed in triplicate tubes for each kind of probiotic. A sample with an equal volume of PBS was used as a blank control. Treatment was performed at 25° C. for 2 h, and samples were taken at 0 h, 0.5 h, 1 h, and 2 h respectively for further LC-HRMS (/MS) analysis.
[0293] 8.6.3. Experimental Results
[0294] The relative abundances of DON, 3-ADON, 15-ADON, NIV, T-2 and HT-2 toxins at 4 different time points of the feed treatment were quantified according to the PRM results of LC-HRMS. The results were shown in
[0295] In addition, the inventor had also verified that the protein as set forth in SEQ ID NO: 1 derived from Thinopyrum can be expressed in yeast cells to obtain an active protein.
[0296] IX. Detoxification Effect Test of Food and Beverage
[0297] 1. Materials and Methods
[0298] Highly processed products of maize, i.e., spouting corn bran, spouting germ meal, and protein powder; Coca-Cola apple juice, and Huiyuan apple juice (an appropriate amount of a DON standard was added to adjust the content of DON in juice); and FTCD protein purified in vitro. Vomitoxin, and L-reduced glutathione (Sigma-Aldrich, USA).
[0299] 2. Experimental Methods
[0300] 2.1 Clearance of DON in Highly Processed Products of Maize by FTCD Protein Purified In Vitro
[0301] 10 g of highly processed products of maize, i.e., spouting corn bran, spouting germ meal, and protein powder, were weighed respectively and ground into powder, 2 g of each sample was weighed and charged into a 15 ml centrifuge tube, 4 ml of PBS was added to prepare a powdery homogeneous solution, and then 100 μg of purified FTCD protein and an appropriate amount of glutathione were added, and the treatment was performed in triplicate tubes for each product. A sample with an equal volume of PBS was used as a blank control. Treatment was performed at 25° C. for 12 h, and samples were taken at 0 h, 1 h, 3 h, and 12 h respectively for further LC-HRMS (/MS) analysis.
[0302] 2.2 Clearance of DON in Juice by FTCD Protein Purified In Vitro
[0303] 1 ml of each of the two brands of juice was taken and charged into a 2 ml centrifuge tube, 25 μg of purified FTCD protein and an appropriate amount of glutathione were added, and the treatment was performed in triplicate tubes for each product. A sample with an equal volume of PBS was used as a blank control. Treatment was performed at 25° C. for 12 h, and samples were taken at 0 h, 1 h, 3 h, and 12 h respectively for further LC-HRMS (/MS) analysis.
[0304] 3. LC-HRMS (/MS) Analysis
[0305] The in vitro reaction solutions of these products were centrifuged and filtered through 0.22 μm filter membranes, and transferred to injection vials for LC-HRMS detection.
[0306] 3.1 Clearance Effect of FTCD Protein Purified In Vitro on DON in Highly Processed Products of Maize
[0307] The relative abundances of DON toxins in highly processed products of maize before and after treatment were quantified according to the PRM results of LC-HRMS. The results were shown in
[0308] 3.1 Clearance of DON in Juice by FTCD Protein Purified In Vitro
[0309] The relative abundances of DON toxins in two brands of apple juice samples before and after treatment were quantified according to the PRM results of LC-HRMS. The results were shown in
[0310] The highly processed products of maize, i.e., spouting corn bran, spouting germ meal, and protein powder, as well as Coca-Cola apple juice and Huiyuan apple juice (an appropriate amount of a DON standard was added to adjust the content of DON in juice) were treated with FTCD protein purified in vitro, and the results were analyzed by LC-HRMS detection, indicating that the protein had good detoxification capability of vomitoxin in a variety of products, which further proved its important practical application value.
[0311] Although the invention has been described with reference to the exemplary embodiments, it should be understood that the invention is not limited to the disclosed exemplary embodiments. Without departing from the scope or spirit of the invention, various adjustments or changes can be made to the exemplary embodiments of the present specification. The scope of the claims should be based on the broadest interpretation to cover all modifications and equivalent structures and functions.