BINDING PROTEIN DRUG CONJUGATES COMPRISING ANTHRACYCLINE DERIVATIVES
20170360953 · 2017-12-21
Assignee
Inventors
Cpc classification
A61K47/6889
HUMAN NECESSITIES
A61K47/6809
HUMAN NECESSITIES
A61K47/6803
HUMAN NECESSITIES
A61K47/64
HUMAN NECESSITIES
A61K47/6849
HUMAN NECESSITIES
A61K47/6855
HUMAN NECESSITIES
A61K47/6867
HUMAN NECESSITIES
A61P15/00
HUMAN NECESSITIES
C12P21/02
CHEMISTRY; METALLURGY
International classification
Abstract
The present invention relates to an anthracycline (PNU) derivative conjugate comprising a derivative of the anthracycline PNU-159682 having the formula (i) or formula (ii) which further comprises a linker structure X-L1-L2-L3-Y.
Claims
1. An anthracycline (PNU) derivative conjugate or a binding protein-drug conjugate (BPDC) the same, said conjugate comprising a derivative of the anthracycline PNU-159682 having the following formula (i) or formula (ii) ##STR00006## said conjugate comprising at its wavy line a linker structure X-L.sub.1-L.sub.2-L.sub.3-Y, wherein L.sub.1-L.sub.3 represent linkers, and two of L.sub.1-L.sub.3 are mandatory, and wherein X and Y further represent each one or more optional linkers.
2. A binding protein-drug conjugate (BPDC), having the following formula: ##STR00007## wherein a) L.sub.1-L.sub.3 represent linkers, and two of L.sub.1-L.sub.3 are mandatory, b) X any Y each represent one or more optional linkers, c) BP is a binding protein, and d) n is an integer ≧1 and ≦10.
3. The anthracycline (PNU) derivative conjugate according to claim 1, wherein the linker structure comprises, as L.sub.2, an oligo-glycine peptide (Gly).sub.n coupled to said anthracycline derivative, directly or by means of another linker L.sub.1, in such a way that the oligo-glycine (Gly).sub.n peptide has a free amino terminus, and wherein n is an integer ≧1 and ≦21.
4. The anthracycline (PNU) derivative conjugate or the binding protein-drug conjugate (BPDC) according to claim 1, wherein the oligo-glycine peptide (Gly).sub.n is conjugated to the anthracycline derivative of formula (i) by means of an alkylenediamino linker (EDA), designated as L.sub.1, which alkylenediamino linker is conjugated to the anthracycline derivative by means of a first amide bond, while it is conjugated to the carboxy terminus of the oligo-glycine peptide by means of a second amide bond, said conjugate of alkylenediamino linker and oligo-glycine peptide having the following formula (v), ##STR00008## wherein the wavy line indicates the linkage to the anthracycline derivative of formula (i), wherein m is an integer ≧1 and ≦11 and n is an integer ≧1 and ≦21.
5. The anthracycline (PNU) derivative conjugate or the binding protein-drug conjugate (BPDC) according to claim 3, wherein the oligo-glycine peptide (Gly).sub.n is, directly or by means of another linker L.sub.1, coupled to Ring A of the anthracycline derivative of formula (ii).
6. The anthracycline (PNU) derivative conjugate or the binding protein-drug conjugate (BPDC) according to claim 3, wherein the oligo-glycine peptide (Gly.sub.n) is conjugated to the anthracycline derivative of formula (ii) by means of an alkyleneamino linker (EA), designated as L.sub.1, which alkyleneamino linker is conjugated to the carboxy terminus of the oligo-glycine peptide by means of an amide bond, said conjugate of alkyleneamino linker and oligo-glycine peptide having the following formula (vi) ##STR00009## wherein the wavy line indicates the linkage to the anthracycline derivative of formula (ii), wherein m is an integer ≧1 and ≦11 and n is an integer ≧1 and ≦21.
7. The binding protein-drug conjugate (BPDC) according to claim 3, wherein the linker structure L.sub.3 comprises a peptide motif that results from specific cleavage of a sortase enzyme recognition motif.
8. The binding protein-drug conjugate (BPDC) according to claim 7, wherein said sortase enzyme recognition motif comprises a pentapeptide.
9. The binding protein-drug conjugate (BPDC) according to claim 7, wherein said sortase enzyme recognition motif comprises at least one of the following amino acid sequences LPXTG, LPXSG, and/or LAXTG.
10. The binding protein-drug conjugate (BPDC) according to claim 2, wherein the anthracycline (PNU) derivative is conjugated, by means of the one or more linkers, to the carboxy terminus of the binding protein, or to the carboxy terminus of at least one domain or subunit thereof.
11. The binding protein-drug conjugate (BPDC) according to claim 2, wherein the binding protein is conjugated to the free amino terminus of the oligo-glycine peptide (Gly.sub.n) by means of an amide bond.
12. The binding protein-drug conjugate (BPDC) according to claim 2, wherein the binding protein is at least one selected from the group consisting of an antibody, modified antibody format, antibody derivative or fragment, antibody-based binding protein, oligopeptide binder and an antibody mimetic.
13. The binding protein-drug conjugate (BPDC) according to claim 2, wherein the binding protein binds at least one entity selected from the group consisting of a receptor, an antigen, a growth factor, a cytokine, and/or a hormone.
14. The binding protein-drug conjugate (BPDC) according to claim 2, wherein the binding protein has at least two subunits.
15. The binding protein-drug conjugate (BPDC) according to claim 14, wherein at least one subunit comprises a derivative of the anthracycline PNU-159682.
16. The binding protein-drug conjugate (BPDC) according to claim 2, wherein the binding protein binds HER-2.
17. The binding protein-drug conjugate (BPDC) according to claim 16, wherein the binding protein is an antibody that binds HER-2.
18. The binding protein-drug conjugate (BPDC) according to claim 2, wherein the antibody is characterized as follows: a) comprises the CDR regions 1-6 of trastuzumab; b) comprises the heavy chain variable domain and the light chain variable domain of trastuzumab; c) has an amino acid sequence identity of 90% or higher with the regions or domains of a) or b); d) is trastuzumab, or a target binding fragment or derivative thereof, and/or e) competes with trastuzumab for binding to HER-2.
19. The binding protein-drug conjugate (BPDC) according to claim 2, wherein the binding protein binds CD30.
20. The binding protein-drug conjugate (BPDC) according to claim 19, wherein the binding protein is an antibody that binds CD30.
21. The binding protein-drug conjugate (BPDC) according to claim 19, wherein the antibody is characterized as follows: a) comprises the CDR regions 1-6 of brentuximab; b) comprises the heavy chain variable domain and the light chain variable domain of brentuximab; c) has an amino acid sequence identity of 90% or higher with the regions or domains of a) or b); d) is brentuximab or a target binding fragment or derivative thereof, and/or e) competes with brentuximab for binding to CD30.
22. A method of producing a binding protein-drug conjugate (BPDC) according to claim 2, wherein a binding protein carrying a sortase enzyme recognition motif is conjugated, by means of a sortase enzyme, to at least one anthracycline derivative conjugate according to claim 2, which carries, as L.sub.2, an oligo-glycine peptide (Gly).sub.n.
23. Use of a binding protein drug conjugate (BPDC) according to claim 2, for the treatment of a human or animal subject suffering from, at risk of developing, and/or being diagnosed for a given pathologic condition.
24. Use according to claim 23, wherein the pathologic condition is a neoplastic disease.
25. Use according to claim 24, wherein the neoplastic disease is a) a cancer that has an HER-2 expression score of 1+, 2+ or 3+, as determined by IHC or ISH, which cancer is preferably a breast cancer, or b) a cancer that is CD30 positive as determined by IHC, ELISA or flow cytometry, preferably a lymphoma, more preferably a Hodgkin lymphoma (HL) or a systemic anaplastic large cell lymphoma (sALCL).
26. A pharmaceutical composition comprising a binding protein drug conjugate (BPDC) according to claim 2 and at least one other pharmaceutically acceptable ingredient.
Description
EXPERIMENTS AND FIGURES
[0179] While the invention has been illustrated and described in detail in the drawings and foregoing description, such illustration and description are to be considered illustrative or exemplary and not restrictive; the invention is not limited to the disclosed embodiments. Other variations to the disclosed embodiments can be understood and effected by those skilled in the art in practicing the claimed invention, from a study of the drawings, the disclosure, and the appended claims.
[0180] In the claims, the word “comprising” does not exclude other elements or steps, and the indefinite article “a” or “an” does not exclude a plurality. The mere fact that certain measures are recited in mutually different dependent claims does not indicate that a combination of these measures cannot be used to advantage. Any reference signs in the claims should not be construed as limiting the scope.
[0181] All amino acid sequences disclosed herein are shown from N-terminus to C-terminus; all nucleic acid sequences disclosed herein are shown 5′->3′.
Example 1: Generation of Site-Specifically C-Terminally PNU-EDA-Gly.SUB.n.-Payload Conjugated Monoclonal Antibodies Brentuximab and Trastuzumab by Sortase Mediated Antibody Conjugation Technology (SMAC-Technology)
[0182] The heavy and light chain variable region sequences of monoclonal antibody brentuximab (clone cAc10) specific for the human CD30 target were obtained from patent US2008213289A1, those of the human HER-2 specific trastuzumab antibody contained in the commercial antibody Herceptin (trastuzumab), or the ADC Kadcyla® derived thereof, were derived from the online IMGT database (V.sub.H: http://www.imgt.org/3Dstructure-DB/cgi/details.cgi?pdbcode=7637&Part=Chain&Chain=7637H & V.sub.L: http://www.imgt.org/3Dstructure-DB/cgi/details.cgi?pdbcode=7637&Part=Chain&Chain=7637L. Chimeric mAb cAc10 and humanized mAb trastuzumab were produced with their heavy and light chains C-terminally tagged with a Sortase A recognition sequence and an additional Strep II affinity purification tag (HC tag sequence: LPETGGWSHPQFEK; LC tag sequence: GGGGSLPETGGWSHPQFEK) using methods known to those skilled in the art. (see
[0183] The anthracycline derivative PNU-EDA-Gly.sub.5 (
[0184] PNU-EDA-Gly.sub.5 was conjugated to mAbs by incubating LPETG-tagged mAbs [10 μM] with PNU-EDA-Gly.sub.5, [200 μM] in the presence of 0.62 μM Sortase A in 50 mM Hepes, 150 mM NaCl, 5 mM CaCl.sub.2, pH 7.5 for 3.5 h at 25° C. The reaction was stopped by passing it through a Protein A HiTrap column (GE Healthcare) equilibrated with 25 mM sodium phosphate pH 7.5, followed by washing with 5 column volumes (CVs) of buffer. Bound conjugate was eluted with 5 CVs of elution buffer (0.1M succinic acid, pH 2.8) with 1 CV fractions collected into tubes containing 25% v/v 1M Tris Base to neutralise the acid. Protein containing fractions were pooled and formulated in 10 mM Sodium Succinate pH 5.0, 100 mg/mL Trehalose, 0.1% % w/v Polysorbate or phosphate20 by G25 column chromatography using NAP 25 (GE Healthcare) columns according to the manufacturer's instructions.
[0185] The aggregate content of each conjugate was assessed by chromatography on a TOSOH TSKgel G3000SWXL 7.8 mm×30 cm, 5 μm column run at 0.5 mL/min in 10% IPA, 0.2M Potassium Phosphate, 0.25M Potassium Chloride, pH 6.95. The drug loading was assessed both by Hydrophobic Interaction Chromatography (HIC) and Reverse-Phase Chromatography. HIC was performed on a TOSOH Butyl-NPR 4.6 mm×3.5 cm, 2.5 μm column run at 0.8 mL/min with a 12 minute linear gradient between A—1.5M (NH.sub.4).sub.2SO.sub.4, 25 mM NaPi, pH=6.95±0.05 and B—75% 25 mM NaPi, pH=6.95±0.05, 25% IPA. Reverse phase chromatography was performed on a Polymer Labs PLRP 2.1 mm×5 cm, 5 μm column run at 1 mL/min/80° C. with a 25 minute linear gradient between 0.05% TFA/H.sub.2O and 0.04% TFA/CH.sub.3CN. Samples were first reduced by incubation with DTT at pH 8.0 at 37° C. for 15 minutes. Both PNU-EDA-Gly.sub.5-based ADCs were predominantly monomeric and had drug-to-antibody-ratios close to the theoretical maximum of, respectively, 4. Table 2 summarizes the results of the ADC manufacturing.
TABLE-US-00002 TABLE 2 Summary of PNU-EDA-Gly.sub.5-based ADCs manufactured. HC, heavy chain; LC, light chain; % mono, % monomer content; DAR, drug-to-antibody-ratio. mAb target HC tag LC tag % mono DAR Brentuximab CD30 Yes Yes 99.6 4.0 Trastuzumab HER-2 Yes Yes 98.2 3.9
Example 2. In Vitro Cytotoxicity Assay with Sortase A-Conjugated Brentuximab-PNU-EDA-Gly.SUB.5 .and Trastuzumab-PNU-EDA-Gly.SUB.5 .ADCs
[0186] Cytotoxicity of Brentuximab-PNU-EDA-Gly.sub.5 was investigated using Karpas-299, a non-Hodgkin's lymphoma cell line expressing high levels of CD30, and L428, a Hodgkin's lymphoma cell line expressing low to moderate levels of CD30 (
[0187] As expected, the anti-CD30 ADC Adcetris® used as a positive control potently killed CD30.sup.HI Karpas-299 cells with an EC50 of 8.2 ng/ml (
[0188] The potency for tumor cell killing of a SMAC-generated Trastuzumab-PNU-EDA-Gly.sub.5 ADC was investigated using SKBR3 cells, a human breast cancer cell line overexpressing HER-2, and T47D cells, a breast cancer cell line naturally expressing low levels of HER-2, and this was compared to the commercially available HER-2-specific ADC Trastuzumab-DM1 conjugate Kadcyla® (
[0189] As expected, the positive control ADC Kadcyla® potently killed HER-2-overexpressing human SKBR3 breast cancer cells, with an EC50 of 23.7 ng/ml (
Example 3: In Vitro Serum Stability of Sortase A-Conjugated cAc10-PNU-EDA-Gly.SUB.5 .ADC as Compared to Maleimide Linker Containing Trastuzumab Emtansine (Kadcyla®)
[0190] The in vitro serum stability of brentuximab-PNU-EDA-Gly.sub.5 (cAc10-PNU-EDA-Gly.sub.5) and Kadcyla ADCs was evaluated in an ELISA-based serum stability assay. Briefly, cAc10-PNU-EDA-Gly.sub.5 was diluted in mouse (Sigma, M5905), rat (Sigma, R9759) and human serum (Sigma, H6914), and incubated at 37° C. Samples were snap-frozen in liquid nitrogen on days 0, 3, 7, 14 and stored at −80° C. until ELISA analysis. For rodent sera, dilution series of cAc10-PNU-EDA-Gly.sub.5 serum samples were captured on ELISA plates coated with 2 μg/ml of a mouse anti-PNU mAb (produced in-house by immunizing mice with a human IgG-PNU conjugate and screening with a BSA-PNU conjugate) to bind ADC, or with anti-human Fc F(ab′)2 (Jackson Immunoresearch) to bind total IgG, and detected with a 1:2500 dilution of an HRP-conjugated anti-human IgG F(ab′)2 (Jackson Immunoresearch). For primate sera, 2 μg/ml of recombinant human CD30 (Sino Biologicals, 10777-H08H) was coated on ELISA plates and a 1:2500 dilution of HRP-conjugated anti-human IgG F(ab′)2 (Jackson Immunoresearch) or 1 μg/ml of a mouse anti-PNU IgG (produced in-house) followed by HRP-conjugated anti-mouse Fc F(ab′)2 (Jackson Immunoresearch) was used for detection of total IgG and ADC, respectively. In the case of Kadcyla, the same protocol was used as above to determine stability in mouse, rat and human serum but with an in-house produced anti-maytansine mAb to bind ADC. Serum concentrations of ADC and total IgGs were calculated from half maximal values of the sample titrations by comparison with a sample of the same ADC of known concentration.
[0191]
Example 4: In Vivo Stability of Sortase A-Conjugated Ac10-Gly5-PNU in Mice
[0192] Ac10-Gly5-PNU ADC was thawed at room temperature and diluted to 0.2 mg/ml in sterile PBS for a dosing concentration of 1 mg/kg. The samples were injected i.V. at a volume of 5 mL/kg in nine female Swiss Webster mice. Blood was collected from animals after 1 h, 24 h, 72 h, 7 days, 14 days, and 21 days. Individual animals according to ethical standards were only used for two blood draw time points at least a week apart. Thus, three mice had blood drawn after 1 h and 7 days, three different mice had blood drawn after 24 h and 14 days, and three additional different mice had blood drawn after 72 h and 21 days for a total of nine mice per group. For each group of animals, approximately 2004, of blood was collected by lancet-puncture of the submandibular vein during the first collection, and approximately 6004, of blood by lancet-puncture of submandibular vein during the final collection (terminal bleed). All blood was collected into tubes containing K2-EDTA. Plasma was isolated from blood by centrifugation at 1500 g for 10 minutes, and transferred to sterile cryovials for storage at −80° C. until analysis by ELISA as described in Example 4.
[0193] The data in
Example 5: Description and Characterization of EMT-6 Clones Expressing HER-2
[0194] Cytotoxicity of anti-HER-2 ADCs was investigated using the murine mammary tumor cell line EMT-6 engineered to overexpress human HER-2. EMT-6 cells were cultured as monolayers in DMEM (Dulbecco's Modified Eagle Medium—high glucose) supplemented with 10% (v/v) of FCS (Fetal Calf Serum), 1% (v/v) of 10,000 IU/mL penicillin-streptomycin and 1% (v/v) of 200 mM L-glutamine.
[0195] EMT-6 cells were electroporated with an expression vector encoding the human HER-2 gene and a puromycin resistance marker and cell pools stably expressing human HER-2 were selected using methods known to those skilled in the art.
[0196] HER-2 expression was confirmed by flow cytometry. Briefly, following trypzinization, 10.sup.6 cells were centrifuged in FACS tubes; obtained pellets were resuspended in PBS (phosphate-buffered saline) supplemented with 2% of FCS. Cells were then incubated with the anti-HER-2 antibody trastuzumab (30 min, 4° C.), followed by centrifugation and washing (3 mL of PBS with 2% FCS). Cells were then resuspended as previously and incubated with anti-human IgG antibody (F.sub.c gamma-specific) PE (Ebioscience) in the dark (30 min, 4° C.), prior to washing (4 mL PBS with 2% FCS). Flow cytometry was then performed on a FACS Calibur (BD).
[0197] HER-2-transfected EMT-6 cells were single cell-sorted by flow cytometry using a FACS ARIA II to isolate single cell clones. These were expanded and HER-2 expression was verified by flow cytometry.
[0198]
Example 6: In Vivo Efficacy of Sortase A-Conjugated Trastuzumab-PNU-EDA-Gly.SUB.5 .ADC in an Orthotopic Breast Cancer Model
[0199] The in vivo efficacy of Trastuzumab-PNU-EDA-Gly.sub.5 was evaluated in an immunocompetent orthotopic mouse model of HER-2-positive breast cancer. For this, 10.sup.6 EMT6 mouse breast cancer cells expressing human HER-2 (Example 6), previously determined to be suitable for in vivo growth, were implanted into the right mammary fat pads of female Balb/c mice. In addition, control animals were implanted with HER-2-negative EMT6 cells. In the following, primary tumor volumes were measured by calipering. After 13 days, when a mean tumor volume of 100-150 mm.sup.3 was reached, tumor-bearing animals were randomized into groups of 6 animals each according to tumor sizes. Animals were treated on the same day (day 13, i.e. day of randomization) and 7 days later (day 20) by intravenous injection of the reference ADC Kadcyla® (15 mg/kg), Trastuzumab-PNU-EDA-Gly.sub.5 (1 mg/kg) or vehicle control. Tumor sizes were monitored by calipering and animals whose tumor volume reached 1000-1500 mm.sup.3 were terminated (
[0200] Tumors in vehicle control mice grew rapidly and reached an average size of approximately 1000 mm.sup.3 within 30 days after transplantation of cells (
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